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TGM

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TGM
Public Server: TGM Galaxy Server (LU)
Scope: Domain Specific
Summary: The *TGM pipeline* is a workflow combining tranSMART server, Galaxy Server and MINERVA platform to enable visually-aided exploration, analysis and interpretation of high-throughput translational medicine data.

Comments

  • The Galaxy part of the pipeline allows for establishing analytical workflows for data from the [tranSMART server](http://r3lab.uni.lu/web/tgm-pipeline/#transmart-setup). Analytical results (list of molecules) are sent to the associated [MINERVA instance](http://r3lab.uni.lu/web/tgm-pipeline/#minerva-setup), hosting the PD map.

User Support

  • [Email support](http://r3lab.uni.lu/web/tgm-pipeline/#contact)

Citations

  • [Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases](https://doi.org/10.1089/big.2015.0057). Satagopam V, Gu W, Eifes S, Gawron P, Ostaszewski M, Gebel S, Barbosa-Silva A, Balling R, Schneider R. *Big Data*. 2016 Jun;4(2):97-108. doi: 10.1089/big.2015.0057.
  • TGM tagged publications in the Galaxy Publication Library

Sponsors

  • [Bioinformatics Core](https://wwwfr.uni.lu/lcsb/research/bioinformatics_core), Université du Luxembourg