RepeatExplorer

Public Server:	RepeatExplorer (CZ)
Scope:	Domain Specific
Summary:	Graph-based clustering and characterization of repetitive sequences, and detection of transposable element protein coding domains.

Comments

Utilities for [Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data](http://www.biomedcentral.com/1471-2105/11/378) and tools for the detection of transposable element protein coding domains
There is an [annual RepeatExplorer workshop](http://repeatexplorer.org/?page_id=14).

[RepetExplorer web site](http://repeatexplorer.org/)
[RepeatExlorer2 and Tarean Manual](https://bitbucket.org/petrnovak/repex_tarean/wiki/RepeatExlorer2%20and%20Tarean%20Manual)

[Registration](https://wiki.metacentrum.cz/w/images/d/d9/Galaxy-registration-manual.pdf) is required. Anyone can register.
Disk space is limited to 200MB for unregistered users. Registered users are free to use up to 50GB.

[RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads](https://doi.org/10.1093/bioinformatics/btt054), Petr Novák, Pavel Neumann, Jiří Pech, Jaroslav Steinhaisl, Jiří Macas, *Bioinformatics*, Volume 29, Issue 6, 15 March 2013, Pages 792–793, doi:10.1093/bioinformatics/btt054
[Publication list at RepeatExplorer.org](http://repeatexplorer.org/?page_id=46)
RepeatExplorer tagged publications in the Galaxy Publication Library