Protologger

Public server:	Protologger
Scope:	Tool Publishing
Summary:	All-in-one genome description tool, aimed at simplifying gathering the data required for writing protologues. This includes providing taxonomic, functional and ecological insights.

Comments

Taxonomic placement: 16S rRNA gene sequence identity values; 16S rRNA gene-based phylogenetic tree; Taxonomic assignment based on GTDB (GTDB-Tk r89); Genomic tree (phylophlan3); ANI values (FastANI); and POCP values
Functional analysis: KEGG based pathway reconstruction; CAZyme profiling; Antibiotic resistance profiling (CARD)
Ecological analysis: Prevalence and average relative abundance across 1,000 samples for 19 unique environments (IMNGS); Occurrence based on MASH comparison to a database of >50,000 MAGs from thousands of samples