Metagenomics

Public Server:	Server (DE)
Scope:	Domain Specific
Summary:	a webserver to process, analyse and visualize Metagenomic and Microbiota data in general.

Comments

More than 200 tools are integrated in this custom Galaxy instance. They were chosen for their use in exploitation of microbiota data.
The public server is hosted by the UseGalaxy.eu team.

Mehta, S., Crane, M., Leith, E., Batut, B., Hiltemann, S., Arntzen, M. Ø., Kunath, B. J., Delogu, F., Sajulga, R., Kumar, P., Johnson, J. E., Griffin, T. J., & Jagtap, P. D. (2021). ASaiM-MT: A validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research, 10, 103. doi: 10.12688/f1000research.28608.1
Batut, B., Gravouil, K., Defois, C., Hiltemann, S., Brugère, J.-F., Peyretaillade, E., & Peyret, P. (2018). ASaiM: A Galaxy-based framework to analyze microbiota data. GigaScience, 7(6). doi: 10.1093/gigascience/giy057
Metagenomics EU tagged publications in the Galaxy Publication Library