Erasmus MC
Launch Galaxy
| Public Server: | Erasmus MC Bioinformatics Galaxy Server (DE) |
|---|---|
| Scope: | Genomics |
| Summary: | General purpose genomics analysis, featuring many standard tools plus many additional tools. |
Comments
- This server supports a wealth of RNA-Seq tasks, including: quantify gene expression (featureCounts, edgeR, experimental design module) determine and prioritize fusion genes (star-fusion, Fuma, ifuse) determine variants and annotate small variants (BAM to varscan2, Annovar) detect small ncRNA derived RNAs in small RNA-seq alignments (Flaimapper) Generate html user defined workflow (iReport) All tools are also available in the Tool Shed.
User Support
- To inquire about this Galaxy server, increasing your disk quotum, or possibilities for collaborative projects, please contact one of our team.
- UseGalaxy.eu Matrix Support Channel
- Galaxy Help Forum
Quotas
- This Galaxy instance may be used without registration, but guests' histories are deleted nightly. To request an account, please contact the Bioinformatics department.
Citations
- FuMa: reporting overlap in RNA-seq detected fusion genes, by Youri Hoogstrate, René Böttcher, Saskia Hiltemann, Peter van der Spek, Guido Jenster and Andrew P Stubbs, Bioinformatics (2015) doi: 10.1093/bioinformatics/btv721
- ErasmusMC tagged publications in the Galaxy Publication Library
Sponsors
- Erasmus Medical Center department of Bioinformatics
- The Freiburg Galaxy Team but also collectively by groups and individuals from across Europe