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CRAVAT-P

Launch Galaxy
CRAVAT-P
Container: CRAVAT-P Galaxy Docker
Scope: Tool Publishing
Summary: A Docker image containing a fully-operational Galaxy instance with pre-installed demonstration material for CRAVAT-P.

Comments

  • The [CRAVAT-P Galaxy Docker instance](https://jraysajulga.github.io/cravatp-galaxy-docker/) includes a Galaxy Instance (version 17.09); CRAVAT-P submit, intersect, annotate, and retrieve Galaxy tool; CRAVAT-P visualization plugin; input files (i.e., VCF and proBED files); and a basic CRAVAT-P workflow.

User Support

  • [Installation guide and tutorial](https://jraysajulga.github.io/cravatp-galaxy-docker/)

Quotas

  • None

Citations

  • [Bridging the Chromosome-Centric and Biology and Disease Human Proteome Projects: Accessible and automated tools for interpreting biological and pathological impact of protein sequence variants detected via proteogenomics](https://pubs.acs.org/doi/abs/10.1021/acs.jproteome.8b00404), Ray Sajulga, Subina Mehta, Praveen Kumar, James E. Johnson, Candace R. Guerrero, Michael C. Ryan, Rachel Karchin, Pratik D. Jagtap, and Timothy J. Griffin. *Journal of Proteome Research*, DOI: 10.1021/acs.jproteome.8b00404 August 21, 2018
  • CRAVAT-P tagged publications in the Galaxy Publication Library

Sponsors

  • University of Minnesota, Minneapolis, Minnesota, United States
  • In-Silico Solutions, Falls Church, Virginia, United States
  • Johns Hopkins University, Baltimore, Maryland, United States