CorGAT
Launch Galaxy
| Public Server: | CorGAT on Laniakea (IT) |
|---|---|
| Scope: | Domain Specific |
| Summary: | Align complete assemblies of SARS-CoV-2 genomes wih the reference genomic sequence, to obtain a list of polymorphic positions and to annotate genetic variants. |
Comments
- CorGAT runs on the [Laniakea](/use/laniakea/) research cloud.
User Support
- [Manual](https://corgat.readthedocs.io/en/latest/)
- [Email](mailto:matteo.chiara@unimi.it)
- [Github issue](https://github.com/matteo14c/CorGAT/issues)
Quotas
- Supports anonymous logins and user account creation.
Citations
- Chiara, M., Zambelli, F., Tangaro, M. A., Mandreoli, P., Horner, D. S., & Pesole, G. (2020). [CorGAT: A tool for the functional annotation of SARS-CoV-2 genomes](https://doi.org/10.1093/bioinformatics/btaa1047). *Bioinformatics*, btaa1047. DOI: 10.1093/bioinformatics/btaa1047
- CorGAT tagged publications in the Galaxy Publication Library
Sponsors
- [Department of Biosciences](http://eng.dbs.unimi.it/ecm/home), University of Milan, Milan, Italy
- [Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies](http://www.ibiom.cnr.it/en/), National Research Council, Bari, Italy
- [ELIXIR-Italy](http://elixir-italy.org/)