Cistrome Analysis Pipeline
Launch Galaxy
| Public Server: | Cistrome Analysis Pipeline (US) |
|---|---|
| Scope: | Domain Specific |
| Summary: | ChIP-chip/seq and gene expression data |
Comments
- The [Cistrome Analysis Pipeline](http://cistrome.org/ap/root) has the standard Galaxy tools, plus 29 additional ChIP-chip and ChIP-seq specific tools, including preliminary peak calling and correlation analyses, downstream genome feature association, gene expression analyses, and motif discovery.
User Support
- [Cistrome Google Group](https://groups.google.com/forum/#!forum/cistrome)
- [Introduction to Cistrome Analysis Pipeline](https://www.youtube.com/watch?v=gQDYrtDhpVc) video.
Quotas
- Requires login, anyone can create a login.
Citations
- [Cistrome: an integrative platform for transcriptional regulation studies](https://doi.org/10.1186/gb-2011-12-8-r83). Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin HG, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. *Genome Biol* 2011; 12(8):R83
- Cistrome tagged publications in the Galaxy Publication Library
Sponsors
- [Cistrome](http://cistrome.org/)