Cistrome Analysis Pipeline

Public server:	Cistrome Analysis Pipeline
Scope:	Domain specific
Summary:	ChIP-chip/seq and gene expression data

Comments

The Cistrome Analysis Pipeline has the standard Galaxy tools, plus 29 additional ChIP-chip and ChIP-seq specific tools, including preliminary peak calling and correlation analyses, downstream genome feature association, gene expression analyses, and motif discovery.

Cistrome: an integrative platform for transcriptional regulation studies. Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin HG, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Genome Biol 2011; 12(8):R83
Cistrome tagged publications in the Galaxy Publication library