CellOrganizer for Galaxy
| Public server: | CellOrganizer for Galaxy |
|---|---|
| Scope: | Tool Publishing |
| Summary: | Create generative models of the spatial organization of cells from microscope images and automatically provide geometries for spatial simulations of cell processes and behaviors |
Comments
- This webserver is provided to provide access to CellOrganizer tools for users who do not have the resources to run the Matlab or Docker versions.
User Support
- CellOrganizer for Galaxy v2.8.0
- CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations, Majarian T.D., Cao-Berg I., Ruan X., Murphy R.F. (2019). In: Hlavacek W. (eds) Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, vol 1945. Humana Press, New York, NY
- Building cell models and simulations from microscope images, Murphy R. F. (2016). Methods 96: 33-39 (Special Issue on High-throughput Imaging).
Quotas
- This server is provided at no charge for non-profit organizations.
- Users may register for an account here.
Citations
- CellOrganizer: Learning and Using Cell Geometries for Spatial Cell Simulations, Majarian T.D., Cao-Berg I., Ruan X., Murphy R.F. (2019). In: Hlavacek W. (eds) Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, vol 1945. Humana Press, New York, NY
- CellOrganizer tagged publications in the Galaxy Publication library
Sponsors
- Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.