CAFU
Launch Galaxy
| Public Server: | CAFU Server (CN) |
|---|---|
| Container: | CAFU Docker |
| Scope: | Domain Specific |
| Summary: | A Galaxy framework for exploring unmapped RNA-Seq data |
Comments
- [CAFU](https://github.com/cma2015/CAFU) is a Galaxy-based bioinformatics framework for comprehensive assembly and functional annotation of unmapped RNA-seq data from single- and mixed-species samples which integrates plenty of existing NGS analytical tools and our developed programs, and features an easy-to-use interface to manage, manipulate and most importantly, explore large-scale unmapped reads.
User Support
- For comments/suggestions/error reports, please contact Siyuan Chen (chenzhuod@gmail.com) or Jingjing Zhai (zhaijingjing603@gmail.com)
- [Tutorials](https://github.com/cma2015/CAFU/tree/master/Tutorials), including a [User Manual](https://github.com/cma2015/CAFU/blob/master/Tutorials/User_manual.md)
- [Test datasets referred in the tutorials](https://github.com/cma2015/CAFU/tree/master/Test_data)
Citations
- [CAFU: A Galaxy framework for exploring unmapped RNA-Seq data](https://academic.oup.com/bib/advance-article/doi/10.1093/bib/bbz018/5349178), Siyuan Chen, Chengzhi Ren, Jingjing Zhai, Jiantao Yu, Xuyang Zhao, Zelong Li, Ting Zhang, Wenlong Ma, Zhaoxue Han, Chuang Ma. *Briefings in Bioinformatics*, doi:10.1093/bib/bbz018.
- CAFU tagged publications in the Galaxy Publication Library
Sponsors
- CAFU is developed and maintained by the lab of Prof. Chuang Ma at the Center of Bioinformatics, College of Life Sciences, [Northwest A&F University](http://en.nwsuaf.edu.cn/index.htm).