ASaiM
| Container: | ASaiM Docker |
|---|---|
| Scope: | Tool Publishing |
| Summary: | Integrates tools specifically chosen for metagenomic and metatranscriptomic studies and hierarchically organized to orient user choice toward the best tool for a given task. |
Comments
- An open-source and opinionated Galaxy-based framework.
- ASaiM is also available on the EU Metagenomics server.
User Support
Quotas
- None
Citations
- Mehta, S., Crane, M., Leith, E., Batut, B., Hiltemann, S., Arntzen, M. Ø., Kunath, B. J., Delogu, F., Sajulga, R., Kumar, P., Johnson, J. E., Griffin, T. J., & Jagtap, P. D. (2021). ASaiM-MT: A validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework. F1000Research, 10, 103. doi: 10.12688/f1000research.28608.1
- Batut, B., Gravouil, K., Defois, C., Hiltemann, S., Brugère, J.-F., Peyretaillade, E., & Peyret, P. (2018). ASaiM: A Galaxy-based framework to analyze microbiota data. GigaScience, 7(6). doi: 10.1093/gigascience/giy057
- ASaiM tagged publications in the Galaxy Publication library
Sponsors
- The Freiburg Galaxy Team but also collectively by groups and individuals from across Europe