DDBJ Read Annotation Pipeline
Launch Galaxy
| Virtual Machine: | DDBJ Read Annotation Pipeline VM (JP) |
|---|---|
| Scope: | Tool Publishing |
| Summary: | Annotates raw sequencing reads from next-generation sequencers(NGS) with high throughput, which are registered in DDBJ Read Archive (DRA). |
Comments
- Pipeline consists of two processes: basic process for genome mapping and de novo assembly, and high-level process for structural and functional annotations such as single nucleotide polymorphism (SNP) detection and expression tag counts.
User Support
Quotas
- None
Citations
- DNA data bank of Japan (DDBJ) progress report, Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura and Toshihisa Takagi, Nucleic Acids Research (2015), doi: 10.1093/nar/gkv1105
- DDBJ tagged publications in the Galaxy Publication Library
Sponsors
- DDBJ Read Annotation Pipeline, Development team