AGEseq @ AspenDB
Launch Galaxy
| Public Server: | AGEseq Galaxy @ AspenDB (US) |
|---|---|
| Scope: | Tool Publishing |
| Summary: | This site provides a user-friendly interface for AGEseq (Analysis of Genome Editing by Sequencing) in a Galaxy instance. |
Comments
- AGEseq compares amplicon sequences with expected target sequences and finds insertion/deletion sites in the amplicon sequences.
- AGEseq can be used for SNP calling.
- AGEseq supports NGS short reads as well as Sanger sequences in multiple file formats
- AGEseq is also available from the [Galaxy Tool Shed](https://toolshed.g2.bx.psu.edu/) for installation into your local Galaxy instance.
User Support
- Please email questions and suggestions to [Liangjiao Xue](mailto:lxue AT uga DOT edu).
Citations
- [AGEseq: Analysis of Genome Editing by Sequencing](https://doi.org/10.1016/j.molp.2015.06.001). Xue LJ and Tsai CJ (2015). *Molecular Plant.* doi:10.1016/j.molp.2015.06.001
- AGEseq tagged publications in the Galaxy Publication Library
Sponsors
- [Tsai Lab](http://aspendb.uga.edu/), [Warnell School of Forestry and Natural Resources](http://warnell.uga.edu/) and [Department of Genetics](http://www.genetics.uga.edu/), University of Georgia.