News (265)
European BioHackathon 2025 – FAIR Image Analysis in Galaxy (Project 9)
4th BioHackathon Germany
Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle
Teaching about galaxy and its workflow capabilities.
Save the date: The Galaxy Training Academy 2026 will happen from May 18th to May 22th
🎉 We are excited to share that the Galaxy Training Academy (GTA) 2026 will take place next year, starting on 18 May 2026! 🎉
From Functional Nucleic Acids to Galaxy Training: Reflections on My Research Stay in Freiburg
Collaboration and innovation with the Galaxy Europe team
GTN joined the TEACH V to talk about education across Communities at Helmholtz
The Galaxy Training Network (GTN) had the pleasure of joining the “Talking about Education Across Communities at Helmholtz” (TEACH V) community conference, which took place in Berlin from September 29 to October 1.
Galaxy joins hands with ERGA at the EMBO course for genome sequencing, assembly, curation, and downstream analyses
Know more about the recent EMBO Practical Course on Genome Sequencing, Assembly, Curation, and Downstream Analyses using Galaxy platform.
We want you to help us organize the Galaxy Training Academy 2026
🎉 We are excited to announce that we have started planning the Galaxy Training Academy (GTA) 2026! 🎉
GTN is now integrated with WorkflowHub
Thanks to a collaborative effort between the teams at Galaxy Training Network (GTN), WorkflowHub, and Australian BioCommons, GTN workflows are now registered automatically with WorkflowHub
Quantifying Electrophoresis Gel Bands with QuPath and Galaxy
Gel Electrophoresis is a staple of molecular biology, providing a way to separate DNA, RNA, or proteins by size and charge
Galaxy at JOBIM
The JOBIM conference, the annual event of the French bioinformatics and biostatistic community, brought together researchers, educators, and innovators in bioinformatics to discuss cutting-edge tools, workflows, and collaborative efforts. Among the highlights of this year's event was the significant presence of Galaxy. This blog post explores the key contributions, presentations, and innovations centered around Galaxy at JOBIM 2025.
Galaxy Training Academy 2025: round two of out GTN education party!
The Galaxy Training Academy 2025 trained researchers in Galaxy data analysis world wide across a variety of scientific topics.
Freiburg Galaxy Team’s Internal Tool Development Workshop
Know more about the recent Tool Development workshop organized at Freiburg Galaxy Team
Scaling Up Hands-On Bioinformatics Training with TIAAS – An Open University Perspective
Back in September 2024, we ran the Open University Bioinformatics Bootcamp—a free, five-day online course introducing students to the core tools and techniques used in single-cell biology
Enhancing Scientific Training: The Galaxy Training Network’s Role in the ELIXIR Training Life-Cycle
In the rapidly evolving landscape of data science, continuous learning and skill development are crucial
An Ode to the Galaxy Community and all I learned
This is my ode to the Galaxy Community to say how grateful I have been for your welcome, your energy, and your support
W4E2025 Workshop Review – Empowering Metabolomics Researchers with W4M
Bring your own data Metabolomics Training Recap.
The Galaxy Europe team at the ELIXIR All Hands Meeting 2025
The Galaxy Europe team has participated in the ELIXIR All Hands meeting 2025 in Thessaloniki, Greece.
Register for our free Galaxy Workshop in Freiburg on Metagenomics and RNA-Seq
Join us for a week of Training about Metagenomics and RNA-Seq in Freiburg
Giessen joins the Galaxy Training Academy 2025 with on site support
🌠 Giessen joins the Galaxy Training Academy 2025 with on site support 🎉
Galaxy Admin Training Interest Survey
ELIXIR Europe and the Galaxy Community are looking to host a Galaxy Admin Training in 2025
Survey about a week-long Galaxy Admin Training in Europe
🚀 Survey about a week-long Galaxy Admin Training in Europe 🇪🇺
Galaxy Training Academy 2025 - Register now 🎉
🌠 Join the GTA2025 and learn how to analyze your data using Galaxy
Galaxy at the E-Science Days 2025 in Heidelberg
We are presenting Galaxy's applicability for the Humanities
Freiburg is hosting its 20th HTS-Workshop
Time to celebrate! Freiburg is hosting its 20th HTS Workshop this March of 2025
An Ode to Helena - from the 🥓Bacon Brigade
@gtn:hexylena, as a key member of the phenomenally creative and passionate Galaxy Training Network team alongside @gtn:shiltemann and @gtn:bebatut, pioneered the concept of Training Infrastructure
Bioinformatics Projects Pathway for Students: New insights from public data!
With a huge thanks to ELIXIR-UK’s DaSH Fellowship funding, we are delighted to present our new Learning Pathway, “Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq”.
Call for Trainers and Helpers for the Galaxy Training Academy 2025
🌠 Join the GTA2025 and support the event
SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go?
We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community.
BioNT basic curriculum Round Two - Starting in autumn 2024 with the RNA-Seq and Python Workshops
BioNT basic curriculum Round Two - Starting in autumn 2024 with the RNA-Seq and Python Workshops
GTN’s Gift for 2024
Community Pages
The GTN joined the BioNT Community Event & CarpentryConnect - Heidelberg 2024
The Galaxy Training Network joined the BioNT Community Event & CarpentryConnect - Heidelberg 2024
🚀 2024: A SPOC-tacular Year in Review 🌌
As we orbit the end of another stellar year, let’s engage warp drive and reflect on the out-of-this-world achievements of the **Single-cell & sPatial Omics Community (SPOC 🖖)**. From launching new tools to charting new tutorials, SPOC’s journey through the Galaxy (platform) has been nothing short of cosmic! 🌠
🖖🏾Galaxy SPOC Community: Year in Review
🚀 2024: A SPOC-tacular Year in Review 🌌
Organizing GTA2025: Give us feedback and your availability!
Give us feedback and your availability for the GTA 2025
SPOC CoFest 2024: How did it go?
First SPOC CoFest
Credit where it’s due: GTN Reviewers in the spotlight
We would like to recognise and thank all of the reviewers who have contributed to the GTN tutorials; your efforts are greatly appreciated, and we are grateful for your contributions to the GTN community
New Tutorial: Tracking of mitochondria and capturing mitoflashes
We are happy to share that a new imaging tutorial for Tracking Mitochondria and Capturing Mitoflashes is now available in the Galaxy Training Network!
Massive open online education party: The Galaxy Training Academy
Massive open online education party: The Galaxy Training Academy
In October 2024, the Galaxy Training Network (GTN) was running a global Galaxy online course
Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle
We were super happy to stand in front of a group of highly motivated people to teach them galaxy and workflows.
ELIXIR Biohackathon in Barcelona
This year, BioHackathon Europe in Barcelona took place between the 4th and 8th of November.
Registration for the Galaxy Training Academy 2024
Join us at the Galaxy Training Academy 2024. Learn all about data analysis with Galaxy, for all levels. Registration is open now!
Galaxy Administrator Time Burden and Technology Usage
Have you wondered how difficult Galaxy is to run? How much time people must spend to run Galaxy? In February 2024, we collected 9 responses from the Galaxy Small Scale Admin group
New Preprint: PathoGFAIR, a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking
We are happy to share our new preprint bioRXiv: PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking.
Galaxy Community Conference 2024 - a brief summary from the Freiburg Galaxy Team!
A brief summary from the Freiburg Galaxy Team for GCC 2024
Open Call for Trainers for the Galaxy Training Academy
We are happy to announce the Galaxy Training Academy 2024, a global online training event, where learners can get to know Galaxy and learn how to analyze data for various research topics.
Celebrating the Milestone: 400 Tutorials on the Galaxy Training Network!
The Galaxy Training Network (GTN) has reached an exciting milestone: our 400th tutorial! This achievement is a testament to the dedication and hard work of our community of educators, researchers, and developers over the last 9 years.
New Galaxy training: Building an amplicon sequence variant (ASV) table from 16S data using DADA2
The GTN hosts its 400th tutorial: Building an amplicon sequence variant (ASV) table from 16S data using DADA2
Standards compliant™ training news via RSS/Atom
All GTN training data are now automatically mirrored via Onedata
As part of the EuroScienceGateway and in cooperation with Onedata and EGI we are providing all GTN training data on a publicly accessible cloud storage
Open Call for Trainers for the Galaxy Training Academy
Join us this October for the Galaxy Training Academy 2024 as a trainer and play a pivotal role in organizing and hosting our global online training event.
Introducing GTN Event Pages
Are you organizing a training event using GTN materials? You can now add your event directly to the GTN!
Open Galaxy Position at Galaxy Europe Team, University of Freiburg
Description
Perfectly FAIR Training!
We are happy to report that over the years of our fruitful collaboration with ELIXIR TeSS, all GTN materials should receive a perfect score on the FAIR-Checker.
Open Galaxy Positions at Melbourne Bioinformatics
Melbourne Bioinformatics is expanding their team and recruiting three new roles to work on bioinformatics training, outreach, and research.
Annual Report 2023 of the Freiburg Galaxy Team
Report about activities and achievements
Learn to use MINERVA Platform’s COVID-19 Disease Map with Galaxy
As part of the work of BeYond COVID, we have developed a new integration between the MINERVA Platform’s COVID-19 Disease Map and Galaxy! Datasets created within Galaxy can now be seamlessly visualized in the MINERVA Platform, allowing you to explore your data in the context of the COVID-19 Disease Map.
New Learning Pathway for FAIR Data Management developed by ELIXIR-UK Data Stewardship Fellows and Experts
ELIXIR-UK’s Data Stewardship Fellowship is excited to announce a new learning pathway focused on FAIR Data Management! This program equips researchers and research support staff with the skills to effectively manage their research data.
BioNT Community Event: Open call for proposals
Are you interested in training and want to exchange and get to know other learning communities? BioNT, together with the Carpentries, is hosting a 3-day community event.
Cool URLs Don’t Change, GTN URLs don’t either.
At the Galaxy Training Network we are really committed to ensuring our training materials are Findable, Accessible, Interoperable, and Reusable
Lost in a topic? Try a Learning Pathway!
We know the GTN has a lot of learning materials (400 and counting!) which can make it quite difficult to figure out where to start in some topics.
GTN ❤️ GMOD
Building upon the work previously done for the SARS-Cov-2 Topic we have further expanded the ‘tag based topics’ to support a new GMOD topic.
Horizon Europe project EOSC EuroScienceGateway at EOSC Winter School 2024
Our Horizont Europe funded EOSC project EuroScienceGateway participated in the EOSC Winter School 2024 in Thessaloniki, Greece, from 29th Jan - 01st Feb.
[GTN news] GTN in Discourse
Howdy teachers and support staff!
[GTN news] Simplified GTN News submission via Google Form
Based on user feedback of the difficulties of the GTN news submission process we have significantly simplified and removed the need for manually editing a YAML file by providing a quick and easy…
[GTN news] FAIR Data management in single cell analysis
New single cell section: Changing data formats & preparing objects
[GTN news] User story: Where Galaxy meets medicinal chemistry
As a medicinal chemistry student, I undertook a semester project on natural products isolation and derivatisation.
[GTN news] Tutorial Feature: Easier launching of WorkflowHub & Dockstore Workflows
While most GTN tutorials include their associated workflow directly in the GTN, some may wish to write a tutorial about running workflows from WorkflowHub, e.g.
2nd BioNT Training workshop - From Hero to Zero with Python
BioNT delivered its second training workshop, From Hero to Zero with Python, from 21th to 24th of November, 2023. This post reports this workshop's organisation, and the backgound and feedback of its applicants and participants.
[GTN news] GTN has left Twitter/X as of October
We did not formally announce it at the time, but the Galaxy Training Network has migrated from Twitter/X to Mastodon, as that platform no longer aligns with the Galaxy Project Code of Conduct nor our…
[GTN news] Feedback: Easy slide recordings
I recently imported Friends Don’t Let Friends Make Bad Graphs, a fantastic and educational github repository showcasing some common visualisation mistakes, that was available under an open license,…
[GTN news] Update: Workflow List now searches WorkflowHub.eu, advanced query syntax
WorkflowHub
ELIXIR Biohackathon in Barcelona
ELIXIR organized last week (October 30th - November 03th, 2023) the BioHackathon Europe in Barcelona.
[GTN news] Single cell subdomain re-launch: Unified and feedback-driven
The European Galaxy Days 2023 CoFest combined the forces of administrator, developer and trainer to update and re-launch the single cell Galaxy instance.
[GTN news] New Feature: Embeddable GTN Tutorial Lists and UseGalaxy Workflow List Widgets
We at the GTN strive to bring you the most fun and fancy features we can in a completely static site!
Success Story: “TIaaS: Training Infrastructure as a Service for an MGnify training”
The MGnify team of EMBL-EBI have used TIaaS to run the MGnify Interactive Tool on scale
1st BioNT Training workshop - A practical introduction to bioinformatics and RNA-seq using Galaxy
BioNT delivered its first training workshop, A practical introduction to bioinformatics and RNA-seq using Galaxy, from 4th to 8th of September, 2023. This post reports this workshop's organisation, the applicants and participants, as well as their feedback about it.
[GTN news] New Feature: GTN User Preferences
We have added a new “User Preferences” page for our GTN users!
[GTN news] AI4Life teams up with GTN to enhance training resources
[GTN news] ELIXIR-UK Fellow Launches New FAIR Data Management Training
Katarzyna Kamieniecka (University of Bradford), a member of the ELIXIR-UK Fellowship Programme, has just launched a new series of lessons to improve {FAIR} data management in the life sciences.
[GTN news] New Feature: Pan-Galactic Tool Search
Did you ever want to run a tool, but not know where it might be available?
OSA2Micro – An Open Science Approach for Microbiology data integration
OSA2Micro in Torino Paul Zierep traveled to Turino on behalf of Bérénice Batut and gave a talk and live demo for the OSA2Micro event.
[GTN news] GTN Celebrates Pride Month: Alan Hart & M. Tuberculosis
June is Pride Month in the US and countries around the world.
New Galaxy training: Genome-wide alternative splicing analysis
GTN hosts a new training for analyzing alternative splicing at genome-wide scale
[GTN news] BY-COVID and RO-Crate collaboration brings new topic: FAIR Data, Workflows & More
As part of the BY-COVID project, the RO-Crate team and BY-COVID members have brought several RO-Crate related tutorials into the Galaxy Training Network, under a brand new {FAIR} topic!
Galaxy admin training
Galaxy Admin Training from April 17th to 21st in Ghent, Belgium.
[GTN news] New Feature: my.galaxy.training
The GTN has set up a very simple “redirection” service based on my.home-assistant.io which Helena discovered after reading some Home Assistant documentation and saw a really neat link which led to…
[GTN news] New Feature: Click-to-run Workflows
The GTN has implemented “click to run” workflows!
[GTN news] New Feature: GTN Rdoc
The internal functions of the GTN have, in the past, not been very well documented.
[GTN news] New Feature: Persistent URLs (PURLs) / Shortlinks
The GTN has added persistent URL identifiers for our tutorials, slides, and FAQs.
[GTN news] New Feature: Learning Pathways!
Introducing Learning Pathways in the GTN!
Training material and workshops - Pathogen detection from (direct Nanopore) sequencing data using Galaxy
Our new GTN material has been published in January and used in workshops
[GTN news] New Feature: Trainer Directory! (Add yourself today!)
Numerous other training groups keep “Trainer Directories” as a way to help students meet trainers in their area, especially for hosting workshops for their local community.
[GTN news] What are the most used tools in the GTN?
Did you ever wonder which was the number one most used tool in the GTN?
[GTN news] GTN Celebrates Black History Month
February marks Black History Month in the United States.
[GTN news] New Tutorial: Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
Food contamination with pathogens are a major burden on our society.
[GTN news] New Feature: Prometheus Metrics endpoint
Prometheus is an increasingly popular monitoring solution whereby sites expose a /metrics endpoint, and then a central Prometheus server can scrape it for data which is then plotted or visualised or…
[GTN news] New GTN Feature Tag-based Topics enables new SARS-CoV-2 topic
The GTN has long struggled with the rigid hierarchy of a single level of classification: topics.
New Paper "Galaxy Training: A powerful framework for teaching!"
Our new paper about the Galaxy Training Network has been published this week in Plos Computational Biology.
[GTN news] New Tutorial Suite: Deconvolution with MuSiC, from public data to disease interrogation!
The still new and shiny single-cell analysis topic now boasts a deconvolution tutorial suite!
[GTN news] New Topic: Single Cell Analysis!
Single-cell analysis now has it’s own topic!
Galaxy in COBLET2022
Cristóbal presented the Galaxy Project-VGP collaboration about Genome Assembly at COBLET2022
[GTN news] New Tutorial: Data Manipulation
Many analyses in Galaxy require small data manipulations in between tools as a sort of “glue” between analysis steps.
Galaxy taking part @ Elixir All Hands 2022
During 6-9th of June, members of the European Galaxy team travelled to Amsterdam to join the ELIXIR All Hands meeting 2022 where we joined other colleagues from ELIXIR-DE.
Training Infrastructure Feedback from Stefanie Dukowic-Schulze
Dr.
[GTN news] New Tutorial: Workflow Reports
Workflow reports are a great Galaxy feature that enable you to define summary reports for any workflow to display the most important results in a single view.
[GTN news] GTN Metadata Schemas
Within the GTN we have had schemas for the various metadata we keep for a long time.
Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle
After 2 years running the SIB "Galaxy Introduction for Life Scientists" course only online, we were super happy to stand in front of a crowd and meet again the students in person.
[GTN news] New Tutorial Feature: Choose Your Own Tutorial
It has been a long discussed feature within the GTN Tutorial Author Community: how can we provide trainees with choice in their tutorials, and how can we as trainers not duplicate large tutorials just to show a slightly different path at one point?.
[GTN news] New Tutorial: VGP assembly pipeline
We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network
Protein target prediction of a bioactive ligand with Align-it and ePharmaLib
Bioactive compounds often bind to several target proteins, thereby exhibiting polypharmacology.
[GTN news] New Feature: Automatic RMarkdown
Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown!
[GTN news] Support for annotating Funding Agencies
The Galaxy Training Network will now support annotating Funding Agencies on training materials.
[GTN news] GTN Smörgåsbord 2: Tapas Edition
GTN Smörgåsbord 2: 14-18 March
A second Smörgåsbord with even more Galaxy Training
[GTN news] New Tutorials: PacBio data QC and Genome Assembly, and Genome Annotation with Funannotate
We have just finished a new collection of training material for genome assembly and annotation!
[GTN news] New FAQs: How does the GTN stay FAIR and Collaborative
The GTN does a lot of work to adhere to the best practices for FAIR training materials as set out in Garcia et al.
How does the GTN stay FAIR and Collaborative?
Find out how contributing simple markdown tutorials can result in fantastically FAIR training.
[GTN news] New Feature: GTN Video Library
After runnning a number of virtual training events this year (e.g.
GTN Video Library
Videos from online training events are now easier to find.
4th de.NBI Cloud User meeting
The 4th de.NBI Cloud User meeting took place from 12th to 24th of November 2021. Many researchers from different bioinformatics research areas gathered to learn more about cloud computing and the de.NBI Cloud.
Biohackathon Europe 2021
Last week we had the BioHackathon Europe 2021 in Barcelona, as a hybrid event and with participants from all over the world.
Training Infrastructure feedback: FORCeS eScience course
Tools in Climate Science: Linking Observations with Modelling
[GTN news] New Feature: GTN API with OpenAPI 3 specification
As part of the work for the Gallantries Grant, we wanted to access some of the data from the GTN in a more accessible, API based way.
GTN API with OpenAPI 3 specification
Access data from the GTN in a more accessible, API based way.
Training Infrastructure Feedback from Dr. Theodora Tsirka
We have received feedback about TIaaS from Dr. Theodora Tsirka, during the Training School on Microbiome Sequencing and Data Analysis
[GTN news] New Topic: Data Science Survival Kit
As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills.
[GTN news] Attention Contributors: GTN Performance Enhancements
Are you one of our amazing GTN Contributors?
Teaching bioinformatics through blood, mucus and tears
Watch out for that My Little Pony baby stroller.
[GTN news] Got a minute? Take our survey about Galaxy for training and have your say!
Do you use Galaxy for Training?
Got a minute? Take our survey about Galaxy for training and have your say!
Do you use Galaxy for Training?
[GTN news] New Feature: Automatic Jupyter Notebooks
As part of the work for the Gallantries Grant, we found ourselves wanting to teach a number of non-Galaxy tutorials on topics such as Python, Bash, SQL, and Git.
Updates from the ELIXIR Galaxy Community
An updated ELIXIR Galaxy website includes our goals, with a special emphasis on interactions with the local, domain-specific and global communities; plus much more
Training Infrastructure as a Service (TIaaS) is sponsored by EOSC-Life
Anyone providing training is eligible to request the use of this service.
[GTN news] New Feature: a feedback page to aggregate and display feedback answers
As you have probably already seen, a feedback form is embedded on the bottom of each tutorial.
[GTN news] Accessibility Improvements
Accessibility Improvements One of our community members suggested on twitter that we support alternative formats for accessing our JavaScript based slides, as this can be difficult for users using…
Highlights from the Galaxy Community Conference 2021
399 participants from 55 countries
Women in Data Science 2021 - Perspectives in Industry and Academia - Join Bayer AG and de.NBI / ELIXIR Germany event
Last June 18th, Bayer AG (as a member of the de.NBI Industrial Forum) and de.NBI/ELIXIR Germany organized a common event entitled "Women in Data Science - Perspectives in Industry and Academia", to…
[GTN news] New Tutorial: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
Effectively monitoring global infectious disease crises, such as the COVID-19 pandemic, requires capacity to generate and analyze large volumes of sequencing data in near real time.
Open Life Science program & the Galaxy community: involvement in OLS-3 and invitation to apply to the next cohort
Open Life Science (OLS) is an online mentoring & training program
[GTN news] New Tutorial: Visualization of RNA-Seq results with Volcano Plot in R
The Volcano plot tutorial introduced volcano plots and showed how they can be easily generated with the Galaxy Volcano plot tool.
[GTN news] New Tutorial: GitPod for contributing to the GTN
Want to contribute to the GTN without installing anything on your own computer?
Training Infrastructure Feedback from Abdus Salam
We have received some feedback about TIaaS from Abdus Salam: A week in Genomics Identification of Single Nucleotide Polymorphism from sequencing reads by using Galaxy server.
[GTN news] New Tutorial: Genome Annotation with Apollo
After two years, the Galaxy Genome Annotation team has finally finished their much awaited tutorial on doing Genome Annotation in Galaxy!
[GTN news] Oh no, it changed! Quick, to the archive menu.
Did you ever start teaching a GTN tutorial, only to realise something changed recently?
Webinars: Galaxy Resources for ...
Watch them now.
[GTN news] New Feature: Easy Abbreviation
Thanks to the great tutorial developed by first time contributor Erik Schill and edited by Simon Bray, we noticed that they defined a number of abbreviations and re-used those throughout their…
[GTN news] Contributing to BioBlend as a developer
The first of the developer tutorials for GCC2021 is live, first time contributor Erik Schill has produced a fantastic tutorial covering how to develop new functions in BioBlend for new APIs in Galaxy.
[GTN news] ¿Hablas español?: The first curated tutorial in Spanish!
¡El primer tutorial en español ya está disponible!
¿Hablas español?: The first curated tutorial in Spanish!
The first Spanish tutorial is live! Galaxy has always had google-translated tutorials, but we are now embarking on a project to assess the learning experience with human-translated, vs google-translated, bioinformatics tutorials.
Two New Teaching Papers using Galaxy
Two hand-in-hand teaching papers have been published this week using Galaxy as a teaching platform.
Plant Transcriptomics Workshop: A Summary
New platform, new learners, new paradigms.
Outcomes of the workshop ’SARS-CoV-2 Data Analysis and Monitoring with Galaxy’
Building capacity, both in the analysis and data management sides of SARS-CoV-2
[GTN news] New Tutorials: Whole transcriptome analysis of Arabidopsis thaliana
Plant lovers are in luck!
Updates from the Single-Cell Community in Freiburg
The single-cell materials in the Galaxy Training Network (GTN) have once again expanded, with welcome contributions from Cristobal Gallardo and Mehmet Tekman of the Freiburg Galaxy Team, and Wendi…
[GTN news] New Feature: Video Player
One of our contributors (Mehmet Tekman) found himself wanting to link to a specific time point in a video.
Training Infrastructure Feedback from Simon Gladman
We recently used TIaaS for a couple of our national bioinformatics training workshops and it was wonderful.
[GTN news] New Tutorial: Downstream Single-cell RNA Plant analysis with ScanPy
Single cell RNA-seq analysis is a cornerstone of developmental research and provides a great level of detail in understanding the underlying dynamic processes within tissues.
Training Infrastructure Feedback from Dr. Fotis Psomopoulos
In November 2020 I was invited to give a lecture on RNA-Seq data analysis in the context of the graduate program on Precision Medicine of the School of Medicine at the Aristotle University of…
Training Infrastructure Feedback from Dr. Ricardo Gonzalo Sanz
Recently, staff from the Statistics and Bioinformatics Unit from Vall d’Hebron Institute of Research (VHIR) were involved in two trainings where we used TIaaS resources.
How to import a workflow from the Workflow Hub and run it on remote COVID-19 data
Thanks to a great Collaboration between the Galaxy Community, Dockstore and the Workflow Hub, it is also possible to import a workflow directly into Galaxy and run it.
[GTN news] New Feature: FAQs
Snippets have received an major overhaul!
[GTN news] New Tutorials: Genome assembly of a MRSA genome
Two new assembly tutorials have been added to the GTN!
Training Infrastructure Feedback from Martin Čech
This has been a second time we've used this free service at ELIXIR Czech Republic and we couldn't be happier.
Training Infrastructure Feedback from Dr. Tuan Leng Tay
From 22 to 26 February 2021, I ran a full-time bioinformatics workshop during the practical “Block Week” for 23 Master of Biology students at the University of Freiburg, Freiburg im Breisgau.
[GTN news] Galaxy Community Conference 2021
This is an external post, please follow the link to read it.
[GTN news] Next GTN CoFest May 20, 2021
Every 3 months we organise one day dedicated to the GTN community!
[GTN news] New Tutorial: Object tracking using CellProfiler
Most biological processes are dynamic and observing them over time can provide valuable insights.
[GTN news] Galaxy 21.01 released!
The Galaxy Team is pleased to announce the release of Galaxy 21.01!
[GTN news] Report on the GTN Smörgåsbord event
The GTN instructors community has just run the largest-ever Galaxy training event: “the GTN Smörgåsbord: A Global Galaxy Course”, co-organized with the Gallantries and the CINECA project and the…
[GTN news] New Feature: Automatic Slides-to-video conversion
This past year has been a struggle for all of us, but one task has become apparent as one of the most time consuming portions of course preparation during a pandemic: Video Production.
GTN Smörgåsbord Report (Spoiler: it was awesome)
The recently completed GTN Smörgåsbord course was the largest Galaxy event ever, and it was absolutely incredible.
Successful use cases from EOSC-Life using Galaxy
The first round of EOSC-Life demonstrators has driven eight successful use cases, three of them using Galaxy.
[GTN news] Galaxy Admin Training Success
The Galaxy Admins and the GTN instructors community has just run the largest-ever Galaxy Admin training event.
New introductory video to the Galaxy Training Network
Geert Bonamie from VIB Bioinformatics Core, and part of ELIXIR Belgium, has created a fancy video introducing the Galaxy Training Network (GTN).
Training Infrastructure Feedback from Mali Salmon-Divon
During January 2021, I led two Galaxy workshops; the first was for 20 Graduate students and lasted for five days from 9 am-2 pm.
Massive open online education party: GTN Smörgåsbord
Starting Monday the 15th of February, the Galaxy Training Network (GTN) is running a global Galaxy online course
Galaxy Admin Training with the Gallantries
Helena Rasche has written a report summarising the successful experience with Galaxy Admin Training that took place last week online.
2021 Galaxy Community Conference will be virtual, global, and affordable
And globally accessible
ISMB 2020 conference videos available on YouTube
In July 2020, the "Intelligent Systems for Molecular Biology" (ISMB) took place as a virtual conference with several Galaxy related talks and posters that are now available on YouTube.
Training Infrastructure Feedback from Lachlan Gray
In January 2021, we ran a bioinformatics workshop for 20 Australian Science Extension students for the SciX program at the University of New South Wales, Sydney.
Nominate a training for the 2021 Galaxy Community Conference (GCC2021)
The training topic nominations for the Galaxy Community Conference 2021 are now open.
GCC2021 Training Topic Nominations are Open
The training topics at GCC2021 are determined BY YOU.
GTN Plant-related trainings
Recently two new trainings of interest to the plant research community have been incorporated to the GTN tutorial collection.
The European Galaxy Server in 2020
What a shitty year! But it’s over and we hope you and your family are safe and healthy.
Open Life Science program & the Galaxy community: involvement in OLS-2 and invitation to apply to the next cohort
involvement in OLS-2 and invitation to apply to the next cohort
Training Infrastructure Feedback on the ELIXIR Belgium workshop “DDA and DIA proteomic analysis in Galaxy”
On December 3 and 4, we ran a 2-day Galaxy Proteomics data analysis workshop organized by ELIXIR Belgium.
Insights from the first cross-training between EOSC-Life and EOSC-Nordic
Anne Fouilloux has written an article for EOSC-Nordic describing her experience with the training on FATES (Functionally Assembled Terrestrial Ecosystem Simulator) using Galaxy and TIaaS and funded…
Training Infrastructure Feedback from Ambre Jousselin
The past 23-25 Nov, I run a 2-day Microbial Genomics workshop for 16 master students.
Insights from the first cross-training between EOSC-Life and EOSC-Nordic
Galaxy as a common platform
Activity report of the last 5 years of the Freiburg Galaxy Team
Crucial infrastructure serving more than 22,000 researchers
Biohackathon Europe 2020
The Galaxy community has participated in several projects
New Paper "A single-cell RNA-sequencing training and analysis suite using the Galaxy framework"
Abstract - The vast ecosystem of single-cell RNA-sequencing tools has until recently been plagued by an excess of diverging analysis strategies, inconsistent file formats, and compatibility issues…
Training Infrastructure Feedback from Leighton Pritchard
Addressing challenges the global coronavirus pandemic
Remote training using Galaxy
Lessons learned from our ELIXIR Galaxy Machine Learning Workshop
EOSC-Life has awarded two training projects to the European Galaxy team
From 1st EOSC-Life Training Open Call
Freiburg Galaxy team is participating to the 2nd cohort of the Open Life Science program
Open Life Science (OLS) is an online mentoring & training program to help individuals and stakeholders in research to become Open Science ambassadors.
Bioinformatics training in Africa during the COVID-19 pandemic
Bioinformatics online
3 steps to get your tool into Galaxy - A real-world example
A real-world example
Galaxy Africa Community Update
During the July virtual meet-up of the Bioinformatics Hub of Kenya (BHKi), a training on Galaxy was conducted by Peter van Heusden (SANBI) with 72 attendees registered from many different countries:…
Training Infrastructure Feedback from Rodrigo Ortega Polo
An introductory workshop to bacterial whole-genome sequence analysis was delivered from December 9-12, 2019 in the Lethbridge Research and Development Centre (Agriculture and Agri-Food Canada).
Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
Update: The paper is now published in the Journal of Cheminformatics.
Processing of Single Cell RNA-Seq Data with Galaxy
We will be hosting a single-cell RNA-seq training workshop at BCC, on both July 17th and July 19th for BCC 2020.
CellProfiler now available in Galaxy
Several modules of the popular image analysis tool CellProfiler are now available in the Galaxy ToolShed{:target="blank"}, thanks to ELIXIR’s{:target="blank"} and EuroBioimaging’s{:target="blank"}…
Training Infrastructure Feedback from Marcel Schulz
Galaxy helps virtual teaching!
Workshop on Workflow Management Systems
The workshop on Workflow Management Systems organised by EOSC-Life WP2 took place on the 2nd and 3rd of April 2020.
de.NBI Training Infrastructure Feedback from Helena Rasche
and was wildly successful
Coronavirus data analysis by University of Freiburg
The Galaxy platform enables the free and transparent overview of COVID-19 genome informations.
Training Infrastructure Feedback from Beata Scholtz
I am an associate professor at the Faculty of Medicine, University of Debrecen, Hungary, and I have been using the Galaxy platform to teach the basics of RNA-seq data analysis to 2nd year Molecular…
Training Infrastructure Feedback from Denny Popp
For a 1-day course on long read sequencing for (meta)genomics I was looking for a powerful, easy-to-use computational infrastructure.
Human multi-omics data from UK Personal Genome Project accessible through UseGalaxy.eu
The Personal Genome Project UK (PGP-UK) provides unprocessed genome, methylome and transcriptome data of participants, together with phenotypic data and pregenerated standardized analysis results and…
Galaxy Training Survey
We need your input on preparing and giving Galaxy Trainings
Training Infrastructure Feedback from the Gallantries Project
The Gallantries Project recently had their final meeting in Thessaloniki, Greece!
Training Infrastructure Feedback from Ambre Jousselin
At the end of November, we organized a 2-day workshop (reads quality, short and long reads genome assembly, reads mapping and RNAseq differential gene expression) for 12 master students.
Training Infrastructure Feedback from Giovanni Widmer
Hi Galaxy team!
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
The Galaxy Team is part of the German Network of Bioinformatics infrastructure (de.NBI) and ELIXIR, both networks have a strong focus on training and education.
RNA-Seq Training feedback from Simon Moxon
I am an associate professor at the University of East Anglia in the UK and I have been wanting to teach undergraduate biology students some practical skills in next generation sequencing analysis…
Training update from Tomas Klingström
Agricultural Sciences collaboration between Swedish University of Agricultural sciences researchers and the Agricultural Research Council in South Africa
Training Infrastructure Feedback from Charles Girardot
In early September this year, the European Molecular Biology Laboratory (EMBL) organized a week long course entitled Chromatin Signatures During Differentiation: Integrated Omics.
Another successful Galaxy high-throughput data analysis workshop in Freiburg
Last week, the Freiburg Galaxy team taught another Galaxy workshop on HTS data analysis.
First ATACseq training material!
Many people are waiting for it!
Galaxy Community Conference - a brief summary!
A brief summary
Training Infrastructure Feedback from Nevena Veljkovic
In the spring semester, the Molecular Biology, a three-year PhD programme by the Faculty of Biology in Belgrade offered an elective course Genomics.
Another successful Galaxy workshop in Melbourne
Recently we ran another Galaxy workshop using UseGalaxy.eu's Training infrastructure as a Service (TIaaS).
Galaxy Workshop registration open!
The registration for our next Galaxy Workshop on HTS data analysis from 23-27 September 2019 in Freiburg is open.
A successful tool and training workshop for the ELIXIR Galaxy Community at Roscoff
Last week, the ELIXIR Galaxy Community organized a 4-days workshop related to Galaxy tool integration and training.
GCC registration is open and abstracts can be submitted until Friday
GCC2019 will be held 1-8 July in Freiburg, Germany.
A(nother) successful Galaxy HTS data analysis workshop in Freiburg
Last week, the Freiburg Galaxy team taught a 5-day workshop on HTS data analysis in Freiburg!
Tool Quest: Do you know the answer?
Last week we got a request from on of our users with a tricky question: I need a tool that: - reads two files (parent, and subset) - I need to pick out random lines from the parent - but it should…
Vote for the Training during the next Galaxy Community Conference
The Galaxy Community Conference starts with training but also continues with training throughout the conference.
Learn how the NASA uses Galaxy!
Dave B pointed us to this nice article about "Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform".
Galaxy enhances Introduction to Genomics as part of Master program in Belgrade, by Nevena Veljkovic
This semester, the Faculty of Biology at the University of Belgrade{:target="blank"} offered for the first time an elective master course Introduction to Genomics which included several hands-on…
A successful Galaxy RNA-seq workshop in Belgrade
Last week, the Freiburg Galaxy team taught a 2 day course in the beautiful city of Belgrade!
Galaxy HTS Workshop 25.2.-1.3.2019 - fully booked
Our next Galaxy Workshop on HTS data analysis from 25.2.-1.3.2019 in Freiburg is full.
Nominate a training for the 2019 Galaxy Community Conference (GCC2019)
The 2019 Galaxy Community Conference (GCC2019) will be held in be held in Freiburg, Germany, 1-6 July.
BeerDEcoded: unofficial kickoff
Street Science community aims to make science tangible & accessible by bringing it to the "street" via open science workshops.
European Galaxy Days
European Galaxy Days were held 19 and 20 November 2018 in Freiburg, Germany.
ELIXIR Biohackathon in Paris
ELIXIR France with the support of the ELIXIR Hub and the ELIXIR interoperability platform and in collaboration with COST CHARME, the National Bioscience Database Center (NBDC) and the Database Center…
Enthusiastic Response to the First ELIXIR-NL Galaxy Training Course in the Netherlands
An ELIXIR-NL training course entitled Bioinformatics for Translational Medicine using Galaxy: see it, do it, teach it!
Training Infrastructure Feedback from Maria Doyle
We recently had the privilege of using the usegalaxy.eu's new Training infrastructure as a Service (TIaaS) for our course on "Introduction to Galaxy and RNA-seq" at the Peter MacCallum Cancer Centre…
Heinz tools for network analysis over transcriptomics datasets
Heinz is an algorithm for searching an optimal subnetwork from a bigger network.
HiC Workshop for INDEPTH in Lucerne
We gave a 2-days workshop specific on HiC in Lucerne (CH).
Successful Galaxy Proteomics workshop in Prague
Together with members from the ELIXIR Czechia node, we have carried out a 2-days Galaxy Proteomics workshop from 4th to 5th of October in Prague, Czech Republic.
A successful Galaxy HTS data analysis workshop
A new Galaxy workshop on HTS data analysis was held in Freiburg last week.
GCCBOSC
From 24th of June to 2nd of July the Galaxy Community Conference (GCC) and Bioinformatics Open Source Conference 2018 (BOSC) were meeting together in Portland, Oregon, United States.
Data Carpentry workshop and CarpentryCon
Last week was CarpentryCon at University College Dublin, Ireland.
Workshop for Galaxy training material and skills improvement
From 21st to 23rd of May was held a workshop for Galaxy training material and skills improvement at the Earlham Institut in Norwich.
Galaxy Workshop registration open!
The registration for our next Galaxy Workshop on HTS data analysis from 17-21 September 2018 in Freiburg is open.
Galaxy Africa
The first Galaxy conference was held last week in Africa, organized by SANBI at University of Wester Cape in Cape Town.
Next Galaxy Workshop on HTS data analysis in September 2018
Because many people already asked: The autumn Galaxy Workshop on high-throughput data analysis will take place from 17.-21.9.2018 here in Freiburg.
GCCBOSC 2018 Training Topic Vote!
Voting closes January 31
Galaxy Workshop - Registration is closed!
Due to the high number of applicants for the next Galaxy workshop from 26.02.-02.03.2018, we close the registration.
ELIXIR Galxy Admin workshop in Oslo.
We had a very nice Galaxy Admin workshop in Oslo.
Bioinformatic training with the B3Africa project
Tomas Klingström from the Swedish University of Agricultural Sciences and part of the amazing B3Africa project used the Freiburg Galaxy server for this training last week.
Our paper about the Galaxy Training material and community as a preprint on bioRXiv
Our paper "Community-driven data analysis training for biology" about the Training material we are developing with the Galaxy Training Network is now available as preprint on bioRXiv.
Registration open for Galaxy HTS data analysis workshop 26.02.-02.03.2018
We are offering another Galaxy workshop on HTS data analysis.
Workshop on Provisioning of Virtual Research Environments and Data Management
(from https://www.rz.uni-freiburg.de/rz/aktuell/vice-ws) The ViCE project team organized together with the CiTAR and the deNBI project a two day workshop and hackathon on Virtual Research…
Helping at the Software Carpentry workshop @ EMBL Heidelberg and Talk @ de.NBIer
Bérénice was helping Toby Hodges, Malvika Sharan and the other instructors for the Software Carpentry workshop organized at EMBL in Heidelberg.
MetaboFlow meeting (training and hackathon)
Björn participated to the Wellcome Trust funded MetaboFlow meeting (training and hackathon) in Birmingham.
BioContainer Hackathon
Björn, Yasset Perez-Riverol (EBI), and the French ELIXIR node organised a BioContainer Hackathon in Paris.
deNBI Summer School - Computational genomics and RNA biology
Björn was at the deNBI Summer School on Computational genomics and RNA biology organised by the RNA Bioinformatics center.
End of our 5-day HTS Galaxy workshop in Freiburg, Germany
After 5 days, our HTS Galaxy workshop in Freiburg is over.
Talks, poster and training @ ISMB and BOSC
Björn and Bérénice were participating to ISBM/ECCB 2017 and particularly to Bioinformatics Open Source Conference (BOSC)) (satellite of ISBM/ECCB): On 21st, they gave with Martin Cech and John…
Galaxy Community Conference (GCC)
Clemens, Björn and Bérénice were participating in the Galaxy Community Conference GCC training: On 26th and 27th June, they participated to the hackathons.
Events (233)
Data science for life scientists - hands-on machine learning for biological data
Hands-on machine learning for biological data using Python in this 5-day course at EMBL-EBI, UK
FAIRyMAGs Hybrid Hackathon 2025: Optimising Metagenomics Assembled Genomes building 🚀
This 4-day hybrid hackathon aims to optimize Metagenomics Assembled Genomes Building workflows
From data to discovery - Galaxy workshop at University of Graz
This course introduces scientists to the data analysis platform Galaxy. The course is an intermediate course; there is no requirement of any programming skills.
The first Galaxy Tool Development Workshop in Freiburg, Germany
Learn to build and publish Galaxy tools in our first hands-on workshop in Freiburg.
Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Galaxy Course Brazil!
Galaxy Training Academy 2024
Are you ready to enhance your data analysis skills? The Galaxy Training Academy is a five-day global online event designed for beginners and those looking to enhance their Galaxy expertise.
Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
2024 Galaxy Community Conference (GCC2024)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
FAIR data management in single-cell analysis
Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
An Introduction to Scaffolding with Hi-C Data in Galaxy
Unlock the power of the Galaxy-VGP workflow in this hands-on webinar and transform your genome assemblies with cutting-edge Hi-C and long-read data techniques!
Making clinical datasets FAIR
de.NBI: Galaxy Microbial Genomics Course - 2024
This course will provide an overview of the field of genomics and how to use the Galaxy platform for genome analysis, with the main focus on the assembly and annotation of bacterial genomes.
REMBI – Recommended Metadata for Biological Images
Data management in Medicinal Chemistry
de.NBI / RTG2355 Galaxy Training Course - RNAseq Analysis
Joint training event of de.NBI and RTG2355 about RNAseq Analysis
Workshop on High-Throughput Data Analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop - 2024
Galaxy is participating in the Computational Applications in Secondary Metabolite Discovery (CAiSMD) online workshop. Paul will give an oral presentation about the potential of Galaxy for novel secondary metabolite discovery, especially in the context of metagenomics research. There will also be a hands-on session demonstrating a simple use case.
International Plant and Animal Genome Conference
The scientific program at PAG includes informative speakers, technial presentations, poster sessions, and workshops are all excellent forums for the exchange of ideas and applications on recent developments.
Workshop on Single-cell Data Analysis with Galaxy
In this workshop, scientists learn single-cell data analysis using Galaxy. There is no requirement of any programming skills.
European Galaxy Days (EGD)
European Galaxy Community meeting in Autumn
Galaxy workshop at the University of Padua
Tips and tricks for using Galaxy
Small Scale Galaxy Admins Meeting
Workshop on High-Throughput Data Analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
2023 Galaxy Community Conference (GCC2023)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
Gallantries & ELIXIR-GOBLET Train the Trainers
This course introduces trainers to learning principles, training techniques, lesson, session, course, and material design as well as assessment and feedback. This course is has been developed for by trainers in the bioinformatics but is suitable for all trainers and educators in higher education.
GTN Smörgåsbord 2023
We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on **May 22-26, 2023**! It will once again be **free, online, self-paced, and choose-your-own-adventure style**. It will feature all the content of previous editions, plus lots more!
Small Scale Galaxy Admins Meeting
Galaxy training: Fair-Ease feat EuroScienceGateway
FAIR-EASE and EuroScienceGateway join forces
Small Scale Galaxy Admins Meeting
Workshop on High-Throughput Data Analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
A practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy
The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.
Small Scale Galaxy Admins Meeting
Galaxy Community Call: The new GTN course builder
A forum to share updates and discuss community-wide topics
Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes
A forum to share updates and discuss community-wide topics
Galaxy Community Call: Muon Science community
A forum to share updates and discuss community-wide topics
Cloud Computing Workshop
European Galaxy Days (EGD)
European Galaxy Community meeting in Autumn
Galaxy Community Call: Workflows, Planemo, BioBlend and tags to automate SARS-CoV-2 genome surveillance
A forum to share updates and discuss community-wide topics
Galaxy Community Call: Tool Search “Past, Present, and Future”
A forum to share updates and discuss community-wide topics
Galaxy Community Call: Machine Learning Toolkit in Galaxy
A forum to share updates and discuss community-wide topics
Making sense of genomic data: COVID-19 web-based bioinformatics
This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.
Galaxy RNA-Seq data analysis workshop
We are offering a Galaxy 2-days crash course on RNA-Seq data analysis.
Galaxy Training on HTS data analysis for the members of NeuroMac
We are offering a Galaxy training on high-throughput data analysis.
Summer School in Bioinformatics
Applications close 8 March
Science driven improvements to tools ecosystems
Open science in the COVID-19 pandemic
ELIXIR Communities - Connectedness
Open science in the COVID-19 pandemic
Workshop at the ELIXIR All Hands 2022
AI-powered data analysis within the European Galaxy
Establishing a roadmap for the Communities towards a sustainable co-production model with the Training Platform
Earth Biodiversity and Galaxy
Members of the ELIXIR Galaxy Community, Tools Platform and the Biodiversity Focus Group will introduce the Vertebrate Genomes Project (VGP) and European Reference Genome Atlas (ERGA) initiatives.
Run your own workflow on GA4GH-powered ELIXIR cloud infrastructures
Galaxy Metabolomics Community Call: Galaxy Interactive Tools - how to create and use them
Dan Blankenberg will present 'How to create and use Galaxy Interactive Tools'
Introduction to metabolomics analysis
Introduction to metabolomics analysis
Applications close 18 February
Mini-symposium on microbial evolutionary genomics
Small Scale Galaxy Admins Meeting
Galaxy Introduction for Life Scientists
This course will give a general introduction on the galaxy web-page structure, how to import data, run tools, and share analyses. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.
Microbial Community Analysis Workshop 2022
Microbiome analysis going from samples, to sequencing, to numerical ecology analysis
GTN Smörgåsbord 2
Get a taste of all the GTN has to offer!
Single-cell RNA-seq analysis using Galaxy
Applications close 31 December
Galaxy HTS data analysis workshop for CRC 1425, CRC 992 and MeInBio members
Workshop on high-throughput data analysis. This is an online course and is limited to the members CRC 1425, CRC 992 and MeInBio.
Galaxy Initiation
Register by December 15
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
GOBLET-ELIXIR workshop for single cell RNA-seq data analysis trainers
FROGS formation: tools for bioinformatics and statistics analyses with amplicon metagenomics data
Learn to work with NGS data of 16S, 18S, ITS … DNA using our Galaxy instance and the FROGS pipeline.
Spanscriptomics: Análisis de células únicas usando Galaxy
Curso de análisis de células únicas usando Galaxy en español.
Separated data PVC: How it works and potential missed implications; and 21.09 Release Testing
Join the discsussion
Genome Annotation & Galaxy Large Data Handling workshop
Open to everybody interested in Genome Annotation or Galaxy
Forces 2021
Single-Cell RNAseq Training Course 2021
Course is full
Image analysis in Galaxy - pain points and lessons learnt
Join the discussion.
Single-Cell RNA-Seq analysis
Discover and apply tools for scRNA-Seq analysis
RNA-Seq Analysis Using Galaxy
from data preparation to statistical testing, visualization and functional analysis
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...
Galaxy @ ISMB/ECCB 2021 & BOSC 2021
Galaxy-E at SORTEE 2021
Open, reliable, and transparent ecology research with Galaxy-E
Traitement de données de séquences par Galaxy
Le module Galaxy vise à présenter l’environnement Galaxy, convivial d’utilisation pour celles et ceux qui seraient réfractaires à la programmation sous UNIX et R, et à vous accompagner dans sa prise en main.
Galaxy Community Conference 2021
Traitement de données de séquences par Galaxy
Galaxy Training Workshop
Imaging in Galaxy
Showcasing the image analysis capabilities of Galaxy.
Release Testing
What's changed recently, and what's involved
Galaxy Resources for Administrators & Infrastructure Providers
Part of the Galaxy Resources Webinar Series
9th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis
Full. Theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes.
Metatranscriptomics analysis using microbiome RNA-seq data in Galaxy
Introduction to basic concepts and tools from the ASaiM-MT workflow.
Customizeable welcome and introduction page for new Galaxy users
Giving new users some obvious guidance when they first arrive.
Galaxy Resources for Tool Developers
Part of the Galaxy Resources Webinar Series
Scalability and Challenges
Galaxy Resources for Educators & Trainers
Part of the Galaxy Resources Webinar Series
Single-cell RNA-seq & network analysis using Galaxy and Cytoscape
Galaxy Resources for Researchers
Part of the Galaxy Resources Webinar Series
Plant Transcriptome Analysis using Galaxy
...with a special focus on bulk and single-cell RNA-Seq data analysis...
ELIXIR and Galaxy Project
a high level overview of the Galaxy Project - what it is, what it does and how to start using it. And the Elixir Galaxy and currently forming Galaxy Czech communities
Using the Norwegian e-infrastructure for Life Science and usegalaxy.no
Online course by ELIXIR Norway
Galaxy and Jupyter for RNA-Seq and complex data analyses
Next generation sequencing for RNA-Seq and Epigenetics
Using the Norwegian e-infrastructure for Life Science and usegalaxy.no
Online course by ELIXIR Norway
RNA-Seq Analysis Using Galaxy
from data preparation to statistical testing, visualization and functional analysis
Speed up your data analysis with Galaxy: Features no one knows about
Using the Norwegian e-infrastructure for Life Science and usegalaxy.no
Online course by ELIXIR Norway
Bringing GPU support to Galaxy
Progress towards executing GPU applications in Galaxy
Galaxy bridge to Jupyter notebooks and RStudio
Jupyter Notebooks and RStudio in combination with Galaxy workflows
Processing thousands of datasets simultaneously
Processing thousands of datasets simultaneously
Galaxy collections and advanced collections features
Release Testing
What's changed recently, and what's involved
Advanced Galaxy workflow features
From parameter sweeping to automatic reports
DRS, long-read-sequencing, proteomics and more - An update to recent COVID-19 workflow developments
Viral Beacon and Galaxy variant workflows
GTN Smörgåsbord: A Global Galaxy Course
Get a taste of all the GTN has to offer!
Insights from selection analysis of complete genomes and read-level data
Galaxy Developer Training & Onbarding; GTN Update
How to grow the Galaxy Developer community? Admin Training Update
Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA
Importance of (open) infrastructures in responding to a pandemic
2021 Galaxy Admin Training
The ins and outs of setting up your own production quality Galaxy server.
Galaxy Developer Roundtable: FastAPI
COVID-19 analysis in Galaxy: Lessons learned and introduction to the series
Webinar: Use Galaxy on the web, the cloud, and your laptop too
Options for using Galaxy: everywhere and right now
DDA and DIA proteomic analysis in Galaxy
Label-free Proteomics data analysis in Galaxy
Galaxy Training Network day - (online) CoFest and community call
Galaxy Training Network day - (online) CoFest and community call
RNA-seq Analysis using Galaxy
Galaxy Training on Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
Learn about Galaxy and how to compose and execute repeatable and reproducible modelling workflow with FATES for improving climate models.
Machine Learning in Bioinformatics using Galaxy at ISCB-LA 2020
An Introduction to Whole Exome Data Analysis using Galaxy
Machine Learning & Omics data at ECCB2020
Galaxy Africa Community Update
High-throughput molecular dynamics with Galaxy
Processing of Single Cell RNA-Seq Data with Galaxy
Reference data with CVMFS and remote jobs with Pulsar
Workshop on Tool Packaging at BCC2020
Introduction to Machine Learning at BCC2020
Biocontainers at the nf-core Hackathon
Processing of Single Cell RNA-Seq Data with Galaxy
Machine Learning in Bioinformatics using Galaxy at IISA2020
Galaxy-ELIXIR Webinar/Workshop: Machine Learning using Galaxy
Register by 16 June
Galaxy-ELIXIR Webinar 5: Behind the scenes - Global Open Infrastructures at work
Galaxy-ELIXIR Webinar 4: Evolution of the Virus
Online Galaxy Introduction Workshop
Galaxy-ELIXIR Webinar 3: Cheminformatics - Screening of the main protease
Galaxy-ELIXIR Webinar 2: Genomics/Variant Calling
Galaxy-ELIXIR Webinar 1: Introduction to Galaxy and the Galaxy workflows for SARS-CoV-2 data analysis
Online Galaxy Introduction Workshop
EVENT POSTPONED - Introduction to machine learning using Galaxy
EVENT POSTPONED - Galaxy single cell RNA-seq data analysis workshop in Freiburg
Blended training event (Norway/Sweden) on the use of Climate data and Copernicus Climate Data Store
Use climate data to develop climate services for adaptation challenges.
2020 Galaxy Admin Training
Galaxy @ ABRF 2020
Single Cell, and Functional Characteristics of Microbiomes
Galaxy RNAseq workshop
Galaxy HTS data analysis workshop in Freiburg
1-week full-day hands-on workshop on analysis of RNA-seq, ChIP-seq, Exome-seq, MethylC-seq data
Galaxy Training Network day - (online) CoFest and community call
Galaxy for linking Bisulfite sequencing with RNA sequencing
RNA-seq workshop for beginners: from sequences to visualization using Galaxy and R
The Gallantries team is offering its second RNA-seq workshop for beginners on October 7-9th. This workshop will be delivered simultaneously at 3 locations across Europe (Rotterdam, NL; Thessaloniki, GR; Tartu, EE).
Metabolomics tool development workshop
Bioconda Collaboration Fest
Join us in Freiburg, join other events or organise your own local Bioconda Collaboration Fest
Galaxy HTS data analysis workshop in Freiburg
We are offering a Galaxy beginner workshop on high-throughput data analysis.
Microscopy Image Analysis Course
Galaxy Training Network day - (online) CoFest and community call
RNA-Seq data analysis with Galaxy for clinical applications
NGS data analysis with Galaxy for clinical applications
A joint GMDS and de.NBI tutorial
2nd de.NBI Cloud User Meeting
RNA-seq workshop for beginners: from sequences to visualization using Galaxy
The Gallantries team is offering its first RNA-seq workshop for beginners on June, 11-12th. It will be delivered simultaneously at two locations across Europe (Rotterdam, NL and Freiburg, DE).
GTN CoFest and community call
Galaxy training and hackathon at Roscoff/France
Miracum whole-exome sequencing pipeline workshop in Freiburg
Galaxy for linking Bisulfite sequencing with RNA sequencing 06.-08.03.2019 in Rostock
Galaxy HTS data analysis workshop in Freiburg
GTN CoFest and call on Galaxy Training Material
2019 Galaxy Admin Training
2019 Galaxy Admin Training
The ins and outs of setting up your own production quality Galaxy server
Galaxy RNA-seq data analysis workshop in Belgrad
Galaxy RNA-seq data analysis workshop in Freiburg
European Galaxy Days
GTN CoFest on Training Material
NGS Introduction using Galaxy
Bioinformatics for Translational Medicine using Galaxy: see it, do it, teach it!
Elixir Galaxy Proteomics Workshop in Prague
RNA-Seq data analysis with Galaxy for clinical applications
Next Generation Sequencing data analysis, LUMC
GTN CoFest on Metagenomics Training Material
A Primer for RNA-Sequencing Processing, Interpreting and Visualization in Jena
Galaxy Community Conference / BOSC
Galaxy Community Conference and Bioinformatics Open Source Conference
ELIXIR 2019 All Hands
ELIXIR 2018 All Hands
CarpentryCon
Workshop for Galaxy training material and skills improvement
4th de.NBI Genomics training course
Microbial genomics: quality control, assembly, annotation & comparative genomics