News (246)
Introducing the Zip Explorer: Import individual files from ZIP archives
Preview the contents of local or remote ZIP archives, explore rich RO-Crate metadata, and import only the files you need directly from the Galaxy interface.
Integration of the Hugging Face Hub with Galaxy
Galaxy users can now browse the Hugging Face Hub as a repository source, import models straight into their histories, and feed them into tools. A step-by-step example shows how to pull models from the Hugging Face Hub into Galaxy and then using the existing DocLayout-YOLO tool for document layout segmentation.
Using Claude AI for Literature Searches
LLMs for literature search produce 'interesting' results: It is almost useful
Galaxy Tool Wrapping: Introducing the New Tool Developers SIG
Join the newly formed Tool Developers Special Interest Group (SIG) to collaborate on high-quality tool maintenance and standardize best practices across the Galaxy ecosystem. This initiative offers a dedicated space for mentorship, peer review, and community-driven development for developers of all experience levels.
Freiburg Galaxy Team’s Internal Tool Development Workshop
Know more about the recent Tool Development workshop organized at Freiburg Galaxy Team
New Interactive Tools Panel in Galaxy 25.0
New panel allocated for interactive tools on Galaxy
🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.
Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.
From text mining to astronomical sources distance estimation on Galaxy
Estimating redshifts of optical counter parts of sources detected in astronomy texts with a Galaxy Workflow
nb2workflow: Turning Annotated Jupyter Notebooks into Galaxy Tools
Convert your scientific notebooks into reusable Galaxy tools with just a tag.
Topic extraction from Astrophysical Reports and follow-up analysis tool suggestions in Galaxy
Matching short scientific texts to relevant analysis pipelines using AI
Voronoi segmentation for Astronomy
Dividing the sky images in regions that include individual astronomical objects.
JupyterGIS: Collaborative Geospatial Analysis in the Cloud
Explore how JupyterGIS supports collaborative geospatial analysis in climate adaptation research.
Vizgen Postprocessing Tool (VPT) now available in Galaxy
Reprocess and refine the single-cell results of MERSCOPE experiments
BellaVista interactive tool now available in Galaxy
Open-Source Visualization for Imaging-Based Spatial Transcriptomics
CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization
CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome.
TabPFN: Foundation Model for Tabular Data in Galaxy
Fast machine learning method for making predictions on any tabular data
ColabFold: GPU-accelerated protein structure prediction comes to UseGalaxy.org
Optimized AlphaFold2-based protein structure prediction now available for all
Annual Report 2023 of the Freiburg Galaxy Team
Report about activities and achievements
Graphical retrospectives of personal and community-wide contributions to Galaxy
Web-based tool to keep track of activities within the different Galaxy communities based on the Git histories of the relevant repositories on GitHub.
Inference using a publicly available pre-trained AI model (BioModels) in Galaxy
Use a Galaxy tool for making prediction on test data using publicly available pre-trained AI model (BioModels) served via a Docker container