News (48)
RO-Crate specification 1.2 released
Specification for RO-Crate 1.2 released
Viral pathogen data analysis beyond BY-COVID
A look back at the BY-COVID project and ahead to upcoming developments
[GTN news] BY-COVID and RO-Crate collaboration brings new topic: FAIR Data, Workflows & More
Repurposing COVID-19 pipelines for the monkeypox virus
One aim of the BY-COVID project is to build a framework enabling data from newly emerging infectious disease threats to be made rapidly and widely accessible.
Galaxy taking part @ Elixir All Hands 2022
During 6-9th of June, members of the European Galaxy team travelled to Amsterdam to join the ELIXIR All Hands meeting 2022 where we joined other colleagues from ELIXIR-DE.
New Pre-Print "Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function"
Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences.
Omicron and SARS-CoV-2 genome surveillance
A first view of the Omicron lineage’s mutational pattern derived transparently and fully reproducibly from raw sequencing reads
An overview and statistics on the Galaxy Help Forum
From the GHelp supporting group, we thank you for the trust you place in us every day.
BY-COVID: A new EU project for pandemic preparedness
A new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response.
SARS-CoV-2 analysis training with Galaxy: a perspective from Africa
The switch to online bioinformatics training forced by the COVID-19 pandemic has opened spaces for collaboration in ways that were previously limited by geography.
New brochure from ELIXIR Germany
ELIXIR Germany has published the handout "ELIXIR GERMANY - Shaping the Bioinformatics Infrastructure for Life Sciences in Europe".
Teaching bioinformatics through blood, mucus and tears
Watch out for that My Little Pony baby stroller.
New Paper "Ready-to-use public infrastructure for global SARS-CoV-2 monitoring"
Updates from the ELIXIR Galaxy Community
An updated ELIXIR Galaxy website includes our goals, with a special emphasis on interactions with the local, domain-specific and global communities; plus much more
SANBI provides leadership at Galaxy Community Conference
Highlights of GCC2021 included talks on Galaxy tools for analysing SARS-CoV-2, the virus that causes COVID-19 and a number of talks on the use of Galaxy in a pathogen genomics and public health context.
Highlights from the Galaxy Community Conference 2021
399 participants from 55 countries
[GTN news] New Tutorial: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data
Two New Teaching Papers using Galaxy
Two hand-in-hand teaching papers have been published this week using Galaxy as a teaching platform.
COVID updates: B.1.617.2 detected in COG-UK data from the beginning of April
We checked the COG-UK data to see if we’d find representative samples of B.1.617.2 (one of the Indian lineages, and a Variant of Concern).
Exploring and monitoring COVID-19 variants with Galaxy
Galaxy Europe has developed a pipeline to automatically create COVID-19 variant information and statistics from raw sequencing data generated by COVID-19 Genomics UK Consortium (COG-UK).
Events (35)
Galaxy Community Call: Workflows, Planemo, BioBlend and tags to automate SARS-CoV-2 genome surveillance
A forum to share updates and discuss community-wide topics
Making sense of genomic data: COVID-19 web-based bioinformatics
This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.
Open science in the COVID-19 pandemic
Open science in the COVID-19 pandemic
Workshop at the ELIXIR All Hands 2022
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
SARS-CoV-2 Data Analysis and Monitoring with Galaxy
...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...
Speed up your data analysis with Galaxy: Features no one knows about
Galaxy bridge to Jupyter notebooks and RStudio
Jupyter Notebooks and RStudio in combination with Galaxy workflows
Processing thousands of datasets simultaneously
Processing thousands of datasets simultaneously
Galaxy collections and advanced collections features
Advanced Galaxy workflow features
From parameter sweeping to automatic reports
DRS, long-read-sequencing, proteomics and more - An update to recent COVID-19 workflow developments
DRS, long-read-sequencing, proteomics and more - An update to recent COVID-19 workflow developments
Open Data Infrastructures to tackle COVID-19 pandemic
Viral Beacon and Galaxy variant workflows
Viral Beacon and Galaxy variant workflows
Open Data Infrastructures to tackle COVID-19 pandemic
Insights from selection analysis of complete genomes and read-level data
Insights from selection analysis of complete genomes and read-level data
Open Data Infrastructures to tackle COVID-19 pandemic
Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA
Supporting the COVID-19 Data portal: viral data cleaning from human reads and submission to ENA
Open Data Infrastructures to tackle COVID-19 pandemic