News (31)
New Paper "Clouds influence the functioning of airborne microorganisms"
Péguilhan et al. have collaborated with Dr. Bérénice Batut and Engy Nasr and used Galaxy for Cloud and Clear skys data analysis in their newly published paper
Paper alert: "Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq"
New Review Article "A Galaxy of informatics resources for MS-based proteomics"
Mehta et al. have written a review about the Galaxy ecosystem as it has emerged as a pivotal player by providing a range of open-source tools and adaptable computing solutions for proteomics research
New Paper "Integrative meta-omics in Galaxy and beyond"
Schiml *et al.* present three integrative meta-omics workflows, developed in Galaxy, for enhanced analysis and integration of metagenomics, metatranscriptomics, and metaproteomics, combined with a newly developed web-application, ViMO (Visualizer for Meta-Omics) to analyse metabolisms in complex microbial communities.
New Paper "An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy"
New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature"
Sabbaghian and colleagues have used the European Galaxy server to study miRNAs as biomarkers for cancer
New Paper "Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart"
Siatra et al. have used the European Galaxy server to identify cell populations capable of cardiac regeneration that we will be able to trace and monitor
New Paper "Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness"
Khan et al. present a comparative genome-wide analysis and mode of evolution of Ketoacyl-CoA synthase (KCS) and Elongation Defective Elongase (ELO) gene families
New Paper "Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera"
Moris et al. have used the European Galaxy server to exploit the intrasexual CHC dimorphism in a mason wasp, Odynerus spinipes
New Paper "The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond"
Bray *et al.* outline the implementation and broad range of functionality of Planemo, a software development kit for designing, testing, and executing Galaxy tools, workflows, and training materials.
New Paper "Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression"
Broche and colleagues have used the European Galaxy server to analyse the role of m6dA in human DNA
New Paper "Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil"
Bertani et al. have used the European Galaxy server to analyse the whole genome sequence of Salmonella Agona carrying blaCTX-M-55 gene
New Paper "Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome"
Akol *et al.* analyzed mouse FOXG1 functions on the chromatin level, having processed the multiomics data set on the European Galaxy server.
New Paper "STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis"
Rapp *et al.* investigated on IL-6 cytokines effects on angiogenesis invoking STAT3 signaling pathway, relying on the European Galaxy server
New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature"
Sabbaghian et al. used the European Galaxy server to identify the roles of miRNAs in cancer
New Paper "Semi-automated assembly of high-quality diploid human reference genomes"
Jarvis et al. determined which combination of current genome sequencing and assembly approaches yield the most complete and accurate diploid genome assembly with minimal manual curation
New Paper "Creating a good learning and sharing environment for bioinformatics"
Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers.
New Paper "Transcriptome profiling of cisplatin resistance in triple-negative breast cancer: New insight into the role of PI3k/Akt pathway"
Amir Sabbaghian and colleagues have published a paper related to the resistance to cisplatin in the treatment of triple negative breast cancer.
Towards a sustainable storage, enabling co-financing of public infrastructure
Research groups and networks can include their own storage into the European Galaxy server and decide about quota and data policies.
New Paper "Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus"
Congratulations Rutger Gjaltema and team for your latest findings about X chromosome regulations.