On 2020-03-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #194
Variant Calling
- lofreq_alnqual was updated to 435b157bed6d
- lofreq_call was updated to 3b4b2121842f
- lofreq_filter was updated to 9cb929f21cfa
- lofreq_indelqual was updated to 5d6a078d30b0
- lofreq_indelqual was updated to f4473557ffc7
- lofreq_viterbi was updated to cdaab621d454
Metagenomic Analysis
- dada2_assigntaxonomyaddspecies was updated to 1c9715cef808
- dada2_dada was updated to 2222f08c8316
- dada2_filterandtrim was updated to 23fc35093b11
- dada2_learnerrors was updated to c48d42d65d2b
- dada2_makesequencetable was updated to 99c6929236fa
- dada2_mergepairs was updated to 69900ffd3b8e
- dada2_plotcomplexity was updated to 1728e5ee871a
- dada2_plotqualityprofile was updated to 2a90d2fd3336
- dada2_removebimeradenovo was updated to 5b752525bd6f
- dada2_seqcounts was updated to f74c56549143
hca_sc_utils_viz
- dropletutils_empty_drops was updated to 00b41600e1c1
- dropletutils_read_10x was updated to 48c1e7b39675
- droplet_barcode_plot was updated to 8f605643ccfd
Proteomics
- maldi_quant_peak_detection was updated to e66f552a3c47
- cardinal_classification was updated to 47fc5b518ffc
- cardinal_classification was updated to b574b84afc4d
- cardinal_combine was updated to bb1ac6b47a6c
- cardinal_data_exporter was updated to 8da3511c9467
- cardinal_filtering was updated to d2ccd8348018
- cardinal_mz_images was updated to 25b83cbd596a
- cardinal_preprocessing was updated to 5bf056c0354e
- cardinal_quality_report was updated to 74b61bf5bc4b
- cardinal_segmentations was updated to 82f6c2f4332d
- cardinal_spectra_plots was updated to 043f9c91f686
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to 63588847a75a
- hicexplorer_chicdifferentialtest was updated to 9180983da5c2
- hicexplorer_chicplotviewpoint was updated to dbf82dd7bdb3
- hicexplorer_chicqualitycontrol was updated to 0e149d0c112c
- hicexplorer_chicsignificantinteractions was updated to 7668fac6cc3a
- hicexplorer_chicviewpoint was updated to 8fb584526458
- hicexplorer_chicviewpointbackgroundmodel was updated to 7fe1a401d833
- hicexplorer_hicadjustmatrix was updated to 26f73673e261
- hicexplorer_hicaggregatecontacts was updated to 4ba4b59dcff1
- hicexplorer_hicaverageregions was updated to 9b02bf402560
- hicexplorer_hicbuildmatrix was updated to 6152fc6da3dc
- hicexplorer_hiccomparematrices was updated to cf39f061ad91
- hicexplorer_hiccompartmentspolarization was updated to a9b3dfde1f31
- hicexplorer_hicconvertformat was updated to cfce80a8e25d
- hicexplorer_hiccorrectmatrix was updated to bc027a1c0952
- hicexplorer_hiccorrelate was updated to 882a7222da7e
- hicexplorer_hicdetectloops was updated to 1119cdd14ddb
- hicexplorer_hicfindrestrictionsites was updated to 8ea7e91d13b3
- hicexplorer_hicfindtads was updated to c798e661aae3
- hicexplorer_hicinfo was updated to 172137e5fadb
- hicexplorer_hicmergeloops was updated to baefc6a3f92a
- hicexplorer_hicmergematrixbins was updated to d5e27e6cfa59
- hicexplorer_hicnormalize was updated to 7f7139b8a671
- hicexplorer_hicpca was updated to b022c377239d
- hicexplorer_hicplotaverageregions was updated to a67cb12c785d
- hicexplorer_hicplotdistvscounts was updated to 104bb2954821
- hicexplorer_hicplotmatrix was updated to 4d2f071002b1
- hicexplorer_hicplotsvl was updated to 41e1d7a40b3b
- hicexplorer_hicplotviewpoint was updated to 88208ca6cb90
- hicexplorer_hicquickqc was updated to 3175b66ea9a3
- hicexplorer_hicsummatrices was updated to 3ff8fa11be2b
- hicexplorer_hictransform was updated to b3553a0a5dcf
- hicexplorer_hicvalidatelocations was updated to bccefbea9b8d
Phylogenetics
- hyphy_absrel was updated to c5533a61ea60
- hyphy_bgm was updated to fb142ad9b580
- hyphy_busted was updated to 4ff928db5592
- hyphy_fade was updated to 62971c58f0dc
- hyphy_fel was updated to 6400b683aced
- hyphy_fubar was updated to da68d7067bf8
- hyphy_gard was updated to c96eee4ebe63
- hyphy_meme was updated to 74b590fdc6a0
- hyphy_relax was updated to c62ddfa33ac5
- hyphy_slac was updated to 36a50b938d70
- hyphy_sm19 was updated to 1cd3060a8504
Get Data
- sra_tools was updated to aad3885b3216
- spocc_occ was updated to 724ad06de5a5
RNA Analysis
- chira_collapse was updated to 2a57d2ef04c6
- chira_extract was updated to dea6bc47a47e
- chira_map was updated to 39bb70c2764e
- chira_merge was updated to 0170de5072d4
- chira_quantify was updated to 903f7a4cfbf0
ChemicalToolBox
- fpocket was updated to 909c8763f127
- rdock_rbcavity was updated to 5f73eb32ddbf
- rdock_rbdock was updated to 1709d2c3dc20
- sucos_clustering was updated to 58d18838e244
- sucos_docking_scoring was updated to 8161c08627bf
- ctb_rdkit_descriptors was updated to 617d4555d8d3
- ctb_rdkit_descriptors was updated to d68bf44e1f5c
- enumerate_charges was updated to 2a868592ebcb
- sdf_to_tab was updated to 71bc02c59d3a
- openbabel_addh was updated to 976a5975b952
- openbabel_change_title was updated to 49d21d05f77c
- openbabel_compound_convert was updated to e6011617c748
- openbabel_filter was updated to da0059ee548a
- openbabel_genprop was updated to c427987b54fd
- openbabel_obgrep was updated to 8b23033ff72c
- openbabel_remduplicates was updated to 1dd562ae055d
- openbabel_remions was updated to 34fb5da28776
- openbabel_remove_protonation_state was updated to 612c134546a2
- openbabel_remsmall was updated to 0c95b0f51114
- openbabel_spectrophore_search was updated to 3d91d24e89c5
- openbabel_structure_distance_finder was updated to c066b5accacf
- openbabel_subsearch was updated to fc199b60875d
- openbabel_svg_depiction was updated to ff95203c7e4b
- prepare_ligands_for_docking was updated to b8838a9aa31a
Imaging
- idr_download_by_ids was updated to 9340cbc7796c
- cp_cellprofiler was updated to ba4fd9fbf924
- cp_common was updated to 9c8ee01c0b22
- cp_convert_objects_to_image was updated to d9fa2e6fae97
- cp_display_data_on_image was updated to c49a557b4e3e
- cp_enhance_or_suppress_features was updated to 29188f9c4ca8
- cp_export_to_spreadsheet was updated to 10257d6d545b
- cp_gray_to_color was updated to d37580e3f4d0
- cp_identify_primary_objects was updated to 99e493b2e951
- cp_mask_image was updated to 54d7d3450800
- cp_measure_granularity was updated to 1062c9e44147
- cp_measure_image_area_occupied was updated to c75596eadae1
- cp_measure_image_intensity was updated to e87d1fd2d673
- cp_measure_image_quality was updated to 26945c55ddff
- cp_measure_object_intensity was updated to 1373b765c8f9
- cp_measure_object_size_shape was updated to eba2ec72f967
- cp_measure_texture was updated to 0f751bb492de
- cp_relate_objects was updated to 3a2cfcd7c38a
- cp_save_images was updated to 6e0f244acd32