msconvert{:target=“_blank”} is a tool to convert mass spectrometry data file formats.
A list of supported file formats is given below:
- agilentbrukeryep.d.tar
- agilentmasshunter.d.tar
- brukerbaf.d.tar
- brukertdf.d.tar
- watersmasslynx.raw.tar
- thermo.raw
- wiff
- wiff.tar
- mzml
- mzxml
- mz5
- mgf
- ms2
This tool is special in multiple ways. At first its one of the few tools that only runs in a very special Container, created by Dr. Matt Chambers, including Wine and Proteowizard. This is because many of the underlying libraries do need a Windows runtime environment and Matt found a way to make this available in a Container so Galaxy Europe and all others can use it on there Cloud systems.
Because msconvert{:target=“_blank”} is part of Proteowizard you need to agree with the vendor licenses before you can use this tool.