Screencasts for Galaxy Unit of Current Protocols in Bioinformatics

These screencasts are supplementatl material for the 2007 Galaxy Paper in Current Protocols in Bioinformatics.

Basic Protocol

• Screencast 1 - Finding human exons with highest SNP density (13 min 10 sec)

Supporting Protocol 1

• Screencast 2 - Loading and understanding datatypes (5 min 17 sec)

Supporting Protocol 2

• Screencast 3A - Preparing data (2 min 01 sec)
• Screencast 3B - Intersect and Subtract (7 min 40 sec)
• Screencast 3C - Merge and Concatenate (6 min 23 sec)
• Screencast 3D - Base coverage and Complement (2 min 05 sec)
• Screencast 3E - Coverage (2 min 14 sec)
• Screencast 3F - Cluster (6 min 44 sec)
• Screencast 3G - Join (3 min 36 sec)

Supporting Protocol 3

• Screencast 4 - Extracting alignments in Galaxy (5 min 12 sec)

Supporting Protocol 4

• Screencast 5 - Bacterial data in Galaxy (11 min 13 sec)

Additional Screencasts

• Screencast 6 - Using Galaxy to create UCSC Genome Browser custom track (4 min 10 sec)
• Screencast 7 - Tools for editing genomic data (4 min 55 sec)
• Screencast 8 - Filtering, sorting and comparing datasets with Galaxy (5 min 19 sec)