Swiss Galaxy Workshop, Wednesday, October 3rd, Bern
Audience
This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.
We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.
The workshop is part of the SyBIT Tech Day series.
Schedule
| Time | Speaker | Title | Slides |
|---|---|---|---|
| 9:15 - 9:30 | ARRIVAL | ||
| 9:30 - 9:40 | Peter Kunszt (SyBIT) | Welcome and usual news | |
| 9:40 - 9:50 | Hans-Rudolf Hotz (FMI) | Galaxy Introduction | |
| 9:50 - 10:30 | Dannon Baker (Galaxy Project) | Status of the Galaxy Project | |
| 10:30 - 11:00 | BREAK | ||
| 11:00 - 11:15 | Mark Robinson (IMLS, University of Zurich) | edgeR and Galaxy | |
| 11:15 - 11:30 | Tim Roloff (FMI) | Microarray analaysis | |
| 11:30 - 11:45 | Hans-Rudolf Hotz (FMI) | NGS analysis | |
| 11:45 - 12:00 | Manuel Kohler (D-BSSE, ETH Zurich) | openBIS and Galaxy | |
| 12:00 - 13:45 | LUNCH Break (lunch will be at 12:15) | ||
| 13:45 - 14:00 | Nikolai Vazov (USIT, University of Oslo) | Installing Galaxy on a cluster : issues around DB server, queuing system, external authentication, etc. | odp |
| 14:00 - 14:30 | Jelle Scholtalbers (TRON gGmbh, University of Mainz) | NGS sample tracking and processing | |
| 14:30 - 14:45 | Mario Emmenlauer (Biozentrum, University of Basel) | High Content Screening (Bee) | |
| 14:45 - 15:15 | BREAK | ||
| 15:15 - 15:30 | Grainne Kerr (DKFZ, Heidelberg) | Galaxy and a high throughput screening lab | |
| 15:30 - 15:45 | Björn Grüning (University of Freiburg) | Chemical Tool Box | html5 |
| 15:45 - 16:00 | Sveinung Gundersen (The Norwegian Radium Hospital) | Genomic HyperBrowser | [pdf](https://depot.galaxyproject.org/hub/attachmentsrimary or operator) |
| 16:00 - 16:01 | Hans-Rudolf Hotz (FMI) | concluding remarks | |
| 16:01 - 16:15 | DEPARTURE (…and going to the pub) |
Location
Bern Hochschulstr. 4
Hauptgebaeude
Room 331
Accessibility by public transport: it is a 5 minutes walk from the main train station. Take exit “Grosse Schnaze/Universitaet” (the one with the elevator). Walking out of the elevator, you will be standing in front of the Hauptgebaeude. Take the entrance of the left side.
Support
This workshop is generously supported by SyBIT / SystemsX.ch
Registration
The workshop is full, and registration is closed. Please contact Hans-Rudolf Hotz in order to get informed in case places become available again.
Links
Questions?
Contact Hans-Rudolf Hotz