Galaxy Community Hub

The European Galaxy Days will be held from the 4th to 7th October 2022 in Freiburg, Germany. This 4-day gathering will be similar to the events we held in 2018, 2016, 2014, and 2012. The first two days will give an overview of the current state of the Galaxy framework with several talks, demonstrations and Birds of a Feather sessions. As part of a CoFest, the second two days offer the opportunity to continue the discussions, to code and hack as well as enjoy the Galaxy community.

Tentative Agenda

Tuesday, October 4

Location: Building 101, room 00-026

TimeSpeakerTitleDuration
09:00 - 09:30Arrival
09:30 - 10:00Hans-Rudolf Hotz, Björn GrüningWelcome & General Galaxy Update
10:00 - 10:30Talks and presentations I
Saskia Hiltemann & Helena RascheGTN Update20’
Bérénice Batut & Beatriz Serrano-SolanoGalaxy Mentor Network5’
10:30 - 11:00Coffee Break
11:00 - 12:30Talks and presentations II
Hervé Ménager​The ELIXIR Tools Ecosystem20’
Yvan Le BrasGalaxy-E: Ecological data analysis, citizen science and biodiversity indicators production!20’
Jason GillUse of Galaxy and Apollo for undergraduate genomics instruction20’
Lucille DelislepyGenomeTracks: Finish your galaxy NGS workflow with a publishable figure20’
12:30 - 14:00Lunch Break
14:00 - 15:00ELIXIR-Galaxy Community meeting (Part 1)
Melanie FöllGalaxy wishlist from the mass spectrometry imaging community10’
Bérénice BatutDNAnalyzer, an online & interactive game on DNA data analysis5’
Marie JosséFrom raw data to biodiversity indicators20’
Nick Stoler​The Global Hub: Your community’s home on the web15’
15:00 - 15:30Coffee Break
15:30 - 17:30ELIXIR-Galaxy Community meeting (Part 2)
Nicola SoranzoPython type annotation of Galaxy and BioBlend: goals and progress10’
Simon GladmanAchieving scale in Galaxy with Pulsar15’
María ChaveroIMPaCT-Data Biomedical Cloud. An initial iteration for a federated virtual computing environment in the context of Precision Medicine in Spain using Galaxy20’
Nate CoraorGravity: Painless Process Management for Galaxy Servers15’
Alireza HeidariNew multi-history view10’
Sveinung GundersenInteractive Client Tools and Galaxy ProTo 2.0 Redux: empowering researchers to implement a GUI alongside methodology by using Galaxy as an IDE20’



Wednesday, October 5

Location: Building 101, room 00-026

TimeSpeakerTitleDuration
09:00 - 09:30Welcome
09:30 - 10:30Talks and presentations III
Helena RascheUpdates from the crossover of Admin & Training20’
Bérénice BatutmicroGalaxy, the place to come for anything regarding microbial data analysis in Galaxy5’
Beatriz Serrano-SolanoImage analysis in Galaxy, is that even possible?10’
10:30 - 11:00Coffee Break
11:00 - 12:30Talks and presentations IV
Paul De GeestImproving Galaxy provenance export using RO-Crate20’
Marius van den BeekBuilding a Galaxy workflow community20’
Michael CrusoeCWL & Galaxy5’
Anup KumarGalaxy Jupyterlab for Artificial intelligence15’
Gildas Le CorguilléNews from the French health projects EMERGEN (Covid19) and ABROmics (AntiBioResistance)15’
12:30 - 14:00Lunch Break
14:00 - 15:00Birds of a Feather (Part 1)
15:00 - 15:30Coffee Break
15:30 - 17:30Birds of a Feather (Part 2)

Please suggest topics to discuss during the Birds of a Feather here.

Thursday and Friday, October 6-7

TimeTitleLocation
09:30 - 17:30CoFestSR01-016/018 (first floor)

Please suggest topics to discuss/work on during the CoFest here.

Supporters

The CoFest is supported by DataPLANT and EuroScienceGateway.

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