Analysis of Functions Expressed by Microbiomes
Analysis of Functions Expressed by Microbiomes
Online Workshop
15-24 November 2021
Funded by American Society of Microbiology (ASM) and Indo-United States Science and Technology Forum (IUSSTF).
Hosted by CSIR-IMTech, Chandigarh and Galaxy-P Team, Minneapolis.
Microbiome experts and instructors from Galaxy community will teach online courses on microbiome analysis via interactive resources.
Agenda
All times are India Standard Time.
| Date | Time | Program | Platform |
|---|---|---|---|
| Nov 15 | 8:30-8:40 AM | Welcome by Dr. Manoj Kumar (CSIR-IMTech, Chandigarh) | MS Teams |
| 8:40-8:50 AM | Inauguration by Dr. Sanjeev Khosla (Director CSIR-IMTech, Chandigarh) | MS Teams | |
| 8:50-9:00 AM | Introduction to the online workshop - Dr. Pratik Jagtap (University of Minnesota, MN) | MS Teams | |
| 9:05-10:00 AM | Inaugural Lecture by Dr. Robert Hettich (Oak Ridge National Laboratory, Oak Ridge, TN) on introduction to microbiome research | MS Teams | |
| 10:05-11:00 AM | Introduction to Galaxy Video Tutorials - Dave Clements (Galaxy Project, Johns Hopkins University) and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) | Shared with Registered Users | |
| 11:15 AM-3:00 PM | Attendees work on assignments based on the Galaxy video tutorials | GTN Slack Channel | |
| 3:30-4:30 PM | Applications within Galaxy - Dr. Anshu Bhardwaj (CSIR-IMTech, Chandigarh) | MS Teams | |
| 5:30-6:30 PM | Ice-Breaker Session (Interaction amongst attendees) | Shared with Registered Users | |
| 6:30-7:30 PM | Hands-on session to answer questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague) | Shared with Registered Users | |
| Nov 16 | 8:15-9:00 AM | Microbiome/Galaxy Kahoot! | Shared with Registered Users |
| 9:05-10:00 AM | Metagenomics Lecture by Dr. Yogesh Shouche (National Centre for Cell Science, Pune) | MS Teams | |
| 10:05-11:00 AM | Introduction to the Metagenomics video tutorials. Drs. Gareth Price and Igor Makunin (QCIF Facility for Advanced Bioinformatics, St. Lucia, Australia) | Shared with Registered Users | |
| 11:15 AM-3:00 PM | Attendees work on assignments based on the metagenomics video tutorials | GTN Slack Channel | |
| 4:30-5:30 PM | Talk on viral metagenomics by Dr. Manoj Kumar (CSIR-IMTech, Chandigarh) | MS Teams | |
| 6:30-7:30 PM | Hands-on session to answer metagenomics questions - Berenice Batut (University of Freiburg, Freiburg) and Saskia Hiltemann (Erasmus University Medical Center, Hague) | Shared with Registered Users | |
| Nov 17 | 8:15-9:00 AM | Metagenomics Kahoot! | Shared with Registered Users |
| 9:05-10:00 AM | Recorded Lecture by Dr. Berenice Batut (University of Freiburg, Freiburg) | MS Teams | |
| 10:05-11:00 AM | Introduction to the Metatranscriptomics video tutorials - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) | Shared with Registered Users | |
| 11:15 AM-3:00 PM | Attendees work assignments based on the metatranscriptomics video tutorials | GTN Slack Channel | |
| 6:30-7:30 PM | Hands-on session to answer metatranscriptomics questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague) | Shared with Registered Users | |
| Nov 18 | 8:15-9:00 AM | Metatranscriptomics Kahoot! | Shared with Registered Users |
| 9:05-10:00 AM | Talk on ocean metaproteomics by Dr. Brook Nunn (University of Washington, Seattle, WA) | MS Teams | |
| 10:05-11:00 AM | Introduction to the Metaproteomics video tutorials - Pratik Jagtap and Subina Mehta (Galaxy-P Team, University of Minnesota, MN) | Shared with Registered Users | |
| 11:15 AM-3:00 PM | Attendees work on the assignments based on metaproteomics video tutorials | GTN Slack Channel | |
| 5:30-6:30 PM | Lecture on meta-omics analysis - Dr. Paul Wilmes (University of Luxembourg, Luxembourg) | MS Teams | |
| 6:30-7:30 PM | Hands-on session to answer metaproteomics questions - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) | Shared with Registered Users | |
| Nov 19 | 9:15-9:45 AM | Metaproteomics Kahoot! | Shared with Registered Users |
| 10:05-10:30 AM | Introduction to presentation formats for attendees - Drs. Timothy Griffin and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) | Shared with Registered Users | |
| Nov 22 | 8:30-11:00 AM | Talks by participants. | MS Teams |
| Nov 23 | 8:30-11:00 AM | Talks by participants. | MS Teams |
| Nov 24 | 9:05-10:00 AM | Concluding Talk by Dr. Sharmila Mande (Distinguished Chief Scientist, TCS Research, Tata Consultancy Services Ltd.) | MS Teams |
| 10:05-11:00 AM | Results, conclusion and feedback form. | MS Teams |
Applications
We are now accepting applications for this workshop.
Apply by October 17.
Workshop Flyer
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