Galaxy Community Hub

Plant & Animal Genome XXVI (PAG 2018)

Galaxy is for Plants and Animals too...

cofest
Date
Location San Diego, California

Galaxy was at Plant and Animal Genome XXVI (PAG 2018), in San Diego, California, United States, January 13-17. There were also pre-conference events this year as well.

DateTimeTopicSessionLinksContact
Wednesday, January 10All dayGMOD 2018 PAG HackathonPre-conference, Brittany RoomRegisterScott Cain
Thursday, January 11All dayTripal HackathonPre-conferenceRegisterMeg Staton, Ethy Cannon
All dayGMOD 2018 PAG HackathonPre-conference, Brittany RoomRegisterScott Cain
Friday, January 12All dayTripal User MeetingPre-conferenceRegisterMeg Staton, Ethy Cannon
9:00-5:00Introduction to Galaxy WorkshopPre-conference workshop, California State University San MarcosRegisterDave Clements, Arun Sethuraman
Saturday, January 1310:40-10:57MiCloud and BioDocklets: A Plug and Play, on-Premises Bioinformatics Cloud, Providing Seamless, Single-Step Execution of NGS PipelinesWorkshop: Interoperability and Federation Across Bioinformatic Platforms and Resources, California RoomPaper, SlidesKonstantinos Krampis
11:10-11:30James Hutton Institute Informatics Visualization SoftwareWorkshop: Connecting Crop Phenotype and Genotype Data, Golden BallroomIain Milne
12:00-12:10IRRI’s Pipeline for Integrating Genotype and Phenotype Data for Enhanced Product DevelopmentWorkshop: Connecting Crop Phenotype and Genotype Data, Golden BallroomJoshua Cobb
Sunday, January 149:30-9:50Introducing Genomics through Genome Annotation: Broadening Access to Course-Based Undergraduate Research ExperiencesWorkshop: Resources and Programs for Undergraduate Education in Genomics, Towne - Meeting HouseSarah Elgin
11:30-11:50Updates to the Hardwood Genomics Project, a Website and Database for Tree Genetic and Genomic DataWorkshop: Forest Tree, Sunrise - Meeting HouseSlidesMing Chen
4:36-4:54The​ ​Tripal​ ​Gateway​ ​Project:​ ​Supporting​ ​Exchange,​ ​Transfer​ ​and​ ​Analysis​ ​of​ ​Large-Scale Data​ ​for​ ​Online​ ​Biological​ ​DatabasesWorkshop: Tripal Database Network and Initiatives, California RoomStephen Ficklin
Monday, January 1510:00-11:30P0054: G-OnRamp: Create Genome Browsers for Collaborative Eukaryotic Genome AnnotationsPoster Session - Even NumbersPosterYating Liu
P0170: Genomic Open-Source Breeding Informatics Initiative Data Extract and Decision Support ToolsPoster Session - Even NumbersStar Yanxin Gao
P0612: TreeGenes: Turning over a New LeafPoster Session - Even NumbersEmily Grau
P0614: Efficiency, Design, and Analytical Improvements in Cartogratree, a Web-Framework for Association Mapping and Landscape Genomics in Forest TreesPoster Session - Even NumbersTaylor Falk
P1128: Phylogeny-Based Classification of Plant LTR Retrotransposons Fills the Gap between Superfamily and Family Levels and Provides Precise Annotation of Genomic ElementsPoster Session - Even NumbersPavel Neumann
3:00-4:30P0039: Apollo a Tool for Visually Editing Genome AnnotationsPoster Session - Odd NumbersNathan Dunn
P0095: PiRATE: A Pipeline to Retrieve and Annotate Transposable Elements in Genome of Non-Model OrganismsPoster Session - Odd NumbersJérémy Berthelier
P0103: RepeatExplorer Galaxy Server for In-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing DataPoster Session - Odd NumbersPetr Novak
P0235: Introducing Genomics through Gene Annotation: Broadening Access to Course-Based Undergraduate Research ExperiencesPoster Session - Odd NumbersSarah C R Elgin
P0613: Orthoquery - a Tripal Module for Supporting Identification and Visualization of OrthogroupsPoster Session - Odd NumbersSumaira Zaman
7:45-8:00CyVerse UK: Widening the Scope to the UK and BeyondWorkshop: CyVerse - Software, Tools, and Services for Data-Driven Discovery, California RoomSlidesAlice Minotto
Tuesday, January 1611:00-11:15C19: Efficiency, Design, and Analytical Improvements in Cartogratree, a Web-Framework for Association Mapping and Landscape Genomics in Forest TreesDigital Tools and Resources Session 3, California RoomTaylor Falk
12:00-12:15C23: RepeatExplorer Galaxy Server for in-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing DataDigital Tools and Resources Session 3, California RoomPetr Novak
12:15-12:35The GOBII Project: Transforming Breeding through Genomic Data Management and Decision SupportWorkshop: Genomics-Assisted Breeding, Town and Country RoomElizabeth Jones
4:00-4:20Galaxy: Introduction and ecosystemWorkshop: Galaxy: An Open Platform for Data Analysis and Integration, California RoomSlidesDave Clements
4:20-5:30Using Galaxy for Genome AnnotationWorkshop: Galaxy: An Open Platform for Data Analysis and Integration, California RoomSlidesJeremy Goecks
5:30-5:50South Green, a Hitchhiker’s Guide to GalaxyWorkshop: Galaxy: An Open Platform for Data Analysis and Integration, California RoomSlidesMarilyne Summo
5:50-6:10Building a Bridge from the Tripal Community Database to GalaxyWorkshop: Galaxy: An Open Platform for Data Analysis and Integration, California RoomMargaret Staton
Wednesday, January 1710:30-10:45C25: PiRATE: A Pipeline to Retrieve and Annotate Transposable Elements of Non-Model OrganismsDigital Tools and Resources Session 4, California RoomSlidesJérémy Berthelier
11:05-11:25Galaxy Community UpdateWorkshop: GMOD, Pacific Salon 4-5SlidesDave Clements
11:25-11:45G-OnRamp: Collaborative Eukaryotic Genome Annotations with Galaxy and ApolloWorkshop: GMOD, Pacific Salon 4-5SlidesLuke Sargent