Table of contents

• • I’m just trying to learn to analyse my data, how did I get here?
• What are the goals of 🖖🏾SPOC?
• Who are we looking for?
• How do we function?
• How can you join & other important links
  • Key words

I’m just trying to learn to analyse my data, how did I get here?

Hello user! You’ll be interested in the following resources:

•    Learning pathway for getting to grips with Galaxy and single cell
•     Single cell training material
•    Single cell Galaxy instance
•     Single cell help forum
•     Single cell Galaxy user community chat room

Saying that, we’d absolutely love to have users feedback on their experiences to help us improve. You’d be very welcome to join the Community of Practice to help improve the Galaxy single cell space!

What are the goals of 🖖🏾SPOC?

Goals

• Prevent work duplication
• Collaborate across pipeline, ensuring users feedback to developers
• Identify community needs
• Tool & tutorial development
• Testing
• Build & support user community
• Benchmarking tools and workflows

Who are we looking for?

Anyone with energy! We love hearing from users, developers, trainers, and everyone in between who is using or developing Galaxy for single cell analysis.

How do we function?

Meetings We meet every 4 weeks (alternating USA, EU and AU time zones) for 1 hour.

Our meeting agenda is:

1. Random intro chatter & introductions
2. Updates from ClickUp site (what people are working on / asking for help)
   • Help/bugs
   • Status reports & new stuff that’s happening
3. Other cool stuff (example: Smorgasbord)
4. Ongoing actions to send out

Emails We send out emails to the mailing list after each meeting, at the mid-way point between meetings, and the day before meetings as a reminder.

Notes We keep rolling notes on a googledoc and monitor our work on ClickUp.

Collaborative Chat Forums When people ask for help or are working across institutes, we set up chat sub-channels to bring them together.

General Chat Forum We have a chat forum to discuss news and ideas, and are represented in the Galaxy Community Reps chat group.

How can you join & other important links

1. Start by joining our 🖖🏾SPOC Chatroom and introduce yourself! (Or you can just lurk there for a bit!)

2. Then, follow the instructions on our ‘👋🏾New here?’ tab for key links to calendars, notes, how to contribute, and more!

Key words

Single-cell Single cell Single-cell RNA-Sequencing Single-cell RNA-seq scRNA-seq snRNA-seq 10x Single cell biology Single cell multiomics ScanPy Seurat AnnData Spatial transcriptomics Spatial omics