CI-WG Updates from the tertile

Using a specific venv for running on the cluster that is configured on the cluster

Highlights of GCC2021 included talks on Galaxy tools for analysing SARS-CoV-2, the virus that causes COVID-19 and a number of talks on the use of Galaxy in a pathogen genomics and public health context.

Galaxy Australia’s new high memory servers have delivered an impressive leap forward for scientists with large datasets and computationally-intensive analyses.

Galaxy is now available in all flavors of the Terra platform.

Watch them now.

From dev to testing to production on the same stack.

New platform, new learners, new paradigms.

UseGalaxy.eu is now automatically collecting, and analyzing raw sequencing data published by the COVID-19 Genomics UK Consortium (COG-UK).

"a useful bag of tricks and tools"

A report on the largest Galaxy event ever.

With hundreds of options available to use Galaxy, how do you pick the right one for you?

Parts 1 and 2

On the path toward Galaxy security compliance

Lessons learned

on UseGalaxy.eu and in the Toolshed

Your own personal Galaxy

January 2021 update

What a shitty year! But it’s over and we hope you and your family are safe and healthy.

involvement in OLS-2 and invitation to apply to the next cohort

Galaxy as a common platform

Crucial infrastructure serving more than 22,000 researchers

Addressing challenges the global coronavirus pandemic

Lessons learned from our ELIXIR Galaxy Machine Learning Workshop

Bioinformatics online

The Galaxy Publication Library hits a milestone

A real-world example

July has been a very busy month for Galaxy Climate

Meetings In the Time of Coronavirus: Conferences go Viral

Studying the RNA modifications of SARS-CoV-2 to improve understanding of SARS viruses

The GVL workbench now integrated through data

How BCC2020 went online

Complete analysis on one platform, including training and collaboration

30% faster and single sign-on, ohh my

a visualization plug-in that extends Galaxy-P’s advantages into the visualization of large, complex datasets

Everything about Galaxy is Ansible!

Integrative meta-omics analysis - Metagenomics, Metatranscriptomics, Metaproteomics

Now more reliable, with better security, and with new features.

Galaxy for Ecology, mixing Ecology research, Citizen Science and Massively Multi Online Science

Galaxy is particularly useful for anyone seeking training in multi-omics analyses and creating of workflows.

A toolset for functional enrichment analysis and conversions of gene lists.

The arguments are building up for why you need this

Agricultural Sciences collaboration between Swedish University of Agricultural sciences researchers and the Agricultural Research Council in South Africa

Drop or duplicate given rows or columns from a tabular dataset, filter rows or columns on their properties, replace or transform table elements, ...

SLAMseq analysis for nucleotide-conversion sequencing datasets

A brief summary

Scaling Genome Annotation for the Masses

Which are dangerously close to the wrong places...

What's happening, right now

What goes into a major lesson update?

Expand your compute horizons.

Get on the cloud, Google Cloud!

New scheduling format this year

Find out about Galaxy's favorite filesystem

QuanTP is a great new gap bridging tool!

A web application for developing Galaxy tools through web interfaces

Citizen Science and Galaxy for Ecology

Hybrid training delivers online participatory training to far-reaching venues, with Galaxy of course

Seeing "Error cloning repository: [Errno 2] No such file or directory"?

Using R Markdown as a framework to develop Galaxy tools

Make your workflows more accessible to non-bioinformaticians

Training using the Galaksio interface

Setup a DigitalOcean droplet with Galaxy, Apache and PostgreSQL

CVMFS and Singularity support

Why not to do assembly on-line?

The Galaxy Publication Library hits a milestone

a new view of the Universe

It needs you

where all the Galaxy tools for Affiniity purification/enrichment MS experiments are located in a form where we all can use them

Working with data programmatically inside Galaxy

a run down of this year's Galaxy Community Conference

UK, UK, UK, and France

How to configure Apache to authenticate a user against an LDAP server that requires authentication to search

Galaxy Series, Volumes 1-12

Secure communication between a Galaxy instance and its users

Focus on the data

A step by step guide

bam.iobio and vcf.iobio can now be launched directly from galaxy using your data already stored there.

For deployment issues, we need a package manager that is operating system and programming language agnostic...

Galaxy CSG flavor

A howto guide on getting data from one instance to another.

Instructions on how to do this ...

A basic guide on how to setup Galaxy with TORQUE in an EC2 instance

a summary of our recent technical developments

Testing the connexion of Galaxy to iRODS object store.

How to generate dataset collections from a Galaxy tool

Explanation of Galaxy's tool dependency definitions that specify how to source the actual packages that implement the tool’s commands

It is pretty simple, though you might hit some obstacles depending on how old your MySQL server is and how much you have manually interfered with the database.

A simple step by step guide on how to use Sebastian Wilzbach’s application, biojs2galaxy.

Outline how I've done this for our local Galaxy set up, which uses nginx.

Using GALAXY_SLOTS with multithreaded Galaxy tools

A HOWTO for installing ANNOVAR in Galaxy

Astronomy, phones, sports teams, chocolate, cars. Not.

Example showing how to install a Java program as a tool in a Galaxy instance

How to implement ProFTPd using PBKFD2 protocol for encryption

GigaGalaxy and “bring your own” data parties

Want to run Galaxy under Bio-Linux 8?

Requires some tweaks in order to allow Galaxy to communicate with the Tool Shed

Tackling irreproducible research

A puppet module for a very basic galaxy server (use for development)

GigaScience moves toward more interactive articles

Make changes to 4 Galaxy configuration files

Documents best practices for tool integration

How to set up IGV-Galaxy integration in Apache and Galaxy, including adding custom genomes

Process for sharing workflows, including wrapping necessary tools

A HOWTO on linking BioServices and Galaxy

How to build CloudMan instances from scratch using the CloudBioLinux deployer

eye-wateringly expensive alcohol, brown cheese and reproducible research at the Galaxy Community Conference in Oslo

XML wrapper and R code

Documents creation of virtual machine ISO image

Python script in CloudBioLinux

A HOWTO guide

The workflow-to-galaxy Ruby Gem

Resources that will help you use Galaxy in your research